myRT

myRT report for GCA_001425785.1_Root1221

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Seq: LMDI01000002.1 Rhizobacter sp. Root1221 contig_10, whole genome shotgun sequence (198996 bp)
Overview 1 RT 1: 194864-198286 bp Neighborhood of RT #1 [194864, 198405] PRK06824 PRK06596 RVT-CRISPR-like GIIM RVT-GII Feature: gene Location: 194864-195208 bp Ori: KQW02659.1 Feature: domain Description: PRK06824 Location: 194870-195206 bp Feature: domain Description: PRK06824 Location: 1 94870-1 95206 bp Feature: gene Location: 195495-196427 bp Ori: KQW02685.1 Feature: domain Description: PRK06596 Location: 195564-196422 bp Feature: domain Description: PRK06596 Location: 1 95564-1 96422 bp Feature: gene Location: 196664-197290 bp Ori: KQW02660.1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 196688-196865 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1 96688-1 96865 bp Feature: domain Description: GIIM Note: maturase Location: 196979-197192 bp Feature: domain Description: GIIM Note: maturase Location: 1 96979-1 971 92 bp Feature: gene Location: 197419-198405 bp Ori: KQW02661.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197662-198286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 97662-1 98286 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06824 (translation initiation factor Sui1; Validated), PRK06596 (RNA polymerase factor sigma-32; Reviewed), RVT-CRISPR, GIIM (pfam08388), RVT-GII

Seq: LMDI01000001.1 Rhizobacter sp. Root1221 contig_1, whole genome shotgun sequence (504945 bp)
Overview 1 RT 1: 41389-50486 bp 2 RT 2: 212323-218818 bp Neighborhood of RT #1 [41389, 50530] Mrr_cat Mrr_cat AIPR COG5421 RVT-UG7 SbcC SbcC Neighborhood of RT #2 [212323, 218844] VOC_like HTH_ARSR RVT-GII NorB SunT Feature: gene Location: 41389-43077 bp Ori: KQW02805.1 Feature: domain Description: Mrr_cat Location: 41536-41701 bp Feature: domain Description: Mrr_cat Location: 41536-41701 bp Feature: domain Description: Mrr_cat Location: 41791-41902 bp Feature: domain Description: Mrr_cat Location: 41791-41902 bp Feature: domain Description: AIPR Location: 42070-42889 bp Feature: domain Description: AIPR Location: 42 070-42 889 bp Feature: gene Location: 43427-45118 bp Ori: KQW02806.1 Feature: domain Description: COG5421 Location: 43976-44936 bp Feature: domain Description: COG542 1 Location: 43976-44936 bp Feature: gene Location: 45483-46961 bp Ori: KQW03140.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 45750-46170 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 45750-46170 bp Feature: gene Location: 46958-47716 bp Feature: gene Location: 48029-50530 bp Ori: KQW02808.1 Feature: domain Description: SbcC Location: 48179-49304 bp Feature: domain Description: SbcC Location: 48179-49304 bp Feature: domain Description: SbcC Location: 49466-50486 bp Feature: domain Description: SbcC Location: 49466-50486 bp Feature: gene Location: 212323-212805 bp Ori: KQW02926.1 Feature: domain Description: VOC_like Location: 212329-212680 bp Feature: domain Description: VOC_like Location: 2 12 32 9-2 12 680 bp Feature: gene Location: 212819-213148 bp Ori: KQW03152.1 Feature: domain Description: HTH_ARSR Location: 212849-213056 bp Feature: domain Description: HTH_ARSR Location: 2 12 849-2 13056 bp Feature: gene Location: 213832-214017 bp Ori: KQW02927.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 213841-214006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 13841-2 14006 bp Feature: gene Location: 214188-216521 bp Ori: KQW03153.1 Feature: domain Description: NorB Location: 214248-216462 bp Feature: domain Description: NorB Location: 2 142 48-2 16462 bp Feature: gene Location: 216724-218844 bp Ori: KQW02928.1 Feature: domain Description: SunT Location: 216757-218818 bp Feature: domain Description: SunT Location: 2 16757-2 18818 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mrr_cat (pfam04471), AIPR (pfam10592), COG5421 (Transposase ), RVT-UG7, SbcC (COG0419), VOC_like (cd16355), HTH_ARSR (smart00418), RVT-GII, NorB (COG3256), SunT (COG2274)

Seq: LMDI01000005.1 Rhizobacter sp. Root1221 contig_13, whole genome shotgun sequence (260609 bp)
Overview 1 RT 1: 147770-153248 bp Neighborhood of RT #1 [147770, 153430] SnoaL ARO8 RVT-Retrons DUF4194 DUF4194 Feature: gene Location: 147770-148144 bp Ori: KQW01304.1 Feature: domain Description: SnoaL Location: 147797-148118 bp Feature: domain Description: SnoaL Location: 147797-148118 bp Feature: gene Location: 148277-149701 bp Ori: KQW01402.1 Feature: domain Description: ARO8 Location: 148304-149696 bp Feature: domain Description: ARO8 Location: 1483 04-149696 bp Feature: gene Location: 149721-151055 bp Ori: KQW01403.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 150186-150819 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 150186-150819 bp Feature: gene Location: 151359-152702 bp Feature: gene Location: 152699-153430 bp Ori: KQW01306.1 Feature: domain Description: DUF4194 Location: 152807-153011 bp Feature: domain Description: DUF4194 Location: 152807-153 011 bp Feature: domain Description: DUF4194 Location: 153137-153248 bp Feature: domain Description: DUF4194 Location: 153 13 7-153 248 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SnoaL (pfam07366), ARO8 (COG1167), RVT-Retrons, DUF4194 (pfam13835)

Seq: LMDI01000056.1 Rhizobacter sp. Root1221 contig_6, whole genome shotgun sequence (244672 bp)
Overview 1 RT 1: 101745-109519 bp Neighborhood of RT #1 [101745, 109519] ABC_trans_aux RVT-Retrons SWIM Feature: gene Location: 101745-102308 bp Ori: KQV83011.1 Feature: domain Description: ABC_trans_aux Location: 101844-102273 bp Feature: domain Description: ABC_trans_aux Location: 10184 4 -102273 bp Feature: gene Location: 102329-102535 bp Feature: gene Location: 102582-104453 bp Ori: KQV83012.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 103140-103761 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10314 0-103761 bp Feature: gene Location: 104737-106434 bp Ori: KQV83013.1 Feature: domain Description: SWIM Location: 106279-106363 bp Feature: domain Description: SWIM Location: 106279-106363 bp Feature: gene Location: 106445-109519 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_trans_aux (pfam03886), RVT-Retrons, SWIM (pfam04434)