myRT

myRT report for GCA_001426025.1_Leaf75

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Seq: LMRL01000005.1 Bacillus sp. Leaf75 contig_13, whole genome shotgun sequence (119576 bp)
Overview 1 RT 1: 115135-119034 bp Neighborhood of RT #1 [115135, 119375] HTH_ARSR COG2159 RVT_N RVT-GII GIIM Feature: gene Location: 115135-115422 bp Feature: domain Description: HTH_ARSR Location: 115180-115396 bp Feature: domain Description: HTH_ARSR Location: 1 1 51 80-1 1 5396 bp Feature: gene Location: 115827-116687 bp Feature: domain Description: COG2159 Location: 115845-116673 bp Feature: domain Description: COG21 59 Location: 1 1 5845-1 1 6673 bp Feature: gene Location: 117726-119375 bp Feature: RT Description: RVT_N Location: 117774-118020 bp Feature: RT Description: RVT_N Location: 1 1 7774-1 1 8020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118074-118734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 8074-1 1 8734 bp Feature: domain Description: GIIM Note: maturase Location: 118800-119034 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 8800-1 1 9034 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARSR (smart00418), COG2159 (Predicted metal-dependent hydrolase, TIM-barrel fold ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: LMRL01000028.1 Bacillus sp. Leaf75 contig_34, whole genome shotgun sequence (38433 bp)
Overview 1 RT 1: 714-4877 bp Neighborhood of RT #1 [714, 4877] RVT_N RVT-GII GIIM COG3547 COG3547 Feature: gene Location: 714-2363 bp Feature: RT Description: RVT_N Location: 762-1008 bp Feature: RT Description: RVT_N Location: 762 -1008 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1062-1722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1062 -172 2 bp Feature: domain Description: GIIM Note: maturase Location: 1788-2022 bp Feature: domain Description: GIIM Note: maturase Location: 1788-2 02 2 bp Feature: gene Location: 2675-3961 bp Feature: domain Description: COG3547 Location: 2729-3329 bp Feature: domain Description: COG3547 Location: 2 72 9-332 9 bp Feature: domain Description: COG3547 Location: 3425-3755 bp Feature: domain Description: COG3547 Location: 342 5-3755 bp Feature: gene Location: 4587-4877 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: LMRL01000008.1 Bacillus sp. Leaf75 contig_16, whole genome shotgun sequence (112213 bp)
Overview 1 RT 1: 72829-80304 bp Neighborhood of RT #1 [72829, 80333] TraG_VirD4 TraG_VirD4 RVT-GII HNHc TrbC Feature: gene Location: 72829-75444 bp Feature: domain Description: TraG_VirD4 Location: 73384-74062 bp Feature: domain Description: TraG_VirD4 Location: 73 3 84-74062 bp Feature: domain Description: TraG_VirD4 Location: 74374-74857 bp Feature: domain Description: TraG_VirD4 Location: 743 74-74857 bp Feature: gene Location: 75434-75766 bp Feature: gene Location: 76001-77899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76316-77030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 763 16-7703 0 bp Feature: domain Description: HNHc Note: nucleases Location: 77627-77759 bp Feature: domain Description: HNHc Note: nucleases Location: 77627-77759 bp Feature: gene Location: 78853-79968 bp Feature: gene Location: 80028-80333 bp Feature: domain Description: TrbC Location: 80118-80304 bp Feature: domain Description: TrbC Location: 80118-803 04 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG_VirD4, RVT-GII, HNHc (smart00507), TrbC (pfam04956)