myRT

myRT report for GCA_001426345.1_Root436

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Seq: LMEM01000009.1 Devosia sp. Root436 contig_2, whole genome shotgun sequence (790078 bp)
Overview 1 RT 1: 210678-217665 bp Neighborhood of RT #1 [210678, 217665] DoxX_2 PRK05298 RVT-Retrons Feature: gene Location: 210678-211049 bp Ori: KQX40001.1 Feature: domain Description: DoxX_2 Location: 210699-210996 bp Feature: domain Description: DoxX_2 Location: 21 0699-21 0996 bp Feature: gene Location: 211270-213918 bp Ori: KQX40002.1 Feature: domain Description: PRK05298 Location: 211909-213889 bp Feature: domain Description: PRK05298 Location: 21 1 909-21 3889 bp Feature: gene Location: 214038-214871 bp Ori: KQX40003.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 214044-214620 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21 4044-21 4620 bp Feature: gene Location: 214984-215943 bp Feature: gene Location: 217333-217665 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DoxX_2 (pfam13564), PRK05298 (excinuclease ABC subunit UvrB), RVT-Retrons

Seq: LMEM01000016.1 Devosia sp. Root436 contig_9, whole genome shotgun sequence (155921 bp)
Overview 1 RT 1: 30123-43170 bp Neighborhood of RT #1 [30123, 44243] RecB TIGR03623 PDDEXK_1 RVT-UG12 N6_N4_Mtase ResIII SF2_C_EcoAI-like Feature: gene Location: 30123-33197 bp Feature: domain Description: RecB Location: 30210-33135 bp Feature: domain Description: RecB Location: 302 10-33135 bp Feature: gene Location: 33395-36007 bp Ori: KQX34002.1 Feature: domain Description: TIGR03623 Location: 34676-34778 bp Feature: domain Description: TIGR0362 3 Location: 34676-34778 bp Feature: domain Description: PDDEXK_1 Location: 35117-35795 bp Feature: domain Description: PDDEXK_1 Location: 35117-35795 bp Feature: gene Location: 36214-37923 bp Ori: KQX34003.1 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 36616-37069 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 36616-37069 bp Feature: gene Location: 38201-41446 bp Ori: KQX34004.1 Feature: domain Description: N6_N4_Mtase Location: 39101-40094 bp Feature: domain Description: N6_N4_Mtase Location: 39101-40094 bp Feature: gene Location: 41451-44243 bp Ori: KQX34005.1 Feature: domain Description: ResIII Location: 41736-42399 bp Feature: domain Description: ResIII Location: 41736-42 399 bp Feature: domain Description: SF2_C_EcoAI-like Location: 43017-43170 bp Feature: domain Description: SF2 _C_EcoAI-like Location: 43017-43170 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RecB (COG4998), TIGR03623 (probable DNA repair protein), PDDEXK_1 (pfam12705), RVT-UG12, N6_N4_Mtase (pfam01555), ResIII (pfam04851), SF2_C_EcoAI-like (cd18799)