myRT

myRT report for GCA_001427045.1_Root558

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Seq: LMGC01000024.1 Ensifer sp. Root558 contig_30, whole genome shotgun sequence (32020 bp)
Overview 1 RT 1: 17361-23902 bp Neighborhood of RT #1 [17361, 23902] DUF4263 RVT-Retrons DEXQc_UvrD UvrD UvrD Feature: gene Location: 17361-17897 bp Feature: gene Location: 17904-19061 bp Feature: domain Description: DUF4263 Location: 18519-19032 bp Feature: domain Description: DUF4263 Location: 1 851 9-1 9032 bp Feature: gene Location: 19403-21127 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 19535-20174 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 9535-201 74 bp Feature: gene Location: 21375-23288 bp Feature: domain Description: DEXQc_UvrD Location: 21675-21765 bp Feature: domain Description: DEXQc_UvrD Location: 21 675-21 765 bp Feature: domain Description: UvrD Location: 22278-22632 bp Feature: domain Description: UvrD Location: 22278-22632 bp Feature: domain Description: UvrD Location: 22887-23079 bp Feature: domain Description: UvrD Location: 22887-23079 bp Feature: gene Location: 23327-23902 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4263 (pfam14082), RVT-Retrons, DEXQc_UvrD (cd17932), UvrD (COG0210)

Seq: LMGC01000015.1 Ensifer sp. Root558 contig_22, whole genome shotgun sequence (108330 bp)
Overview 1 RT 1: 36321-41232 bp Neighborhood of RT #1 [36321, 41240] CspC DUF2384 RVT-GII DAP_dppA_3 BioF Feature: gene Location: 36321-36527 bp Feature: domain Description: CspC Location: 36327-36525 bp Feature: domain Description: CspC Location: 3632 7-3652 5 bp Feature: gene Location: 37287-37676 bp Feature: domain Description: DUF2384 Location: 37524-37659 bp Feature: domain Description: DUF2 384 Location: 3752 4-37659 bp Feature: gene Location: 38113-38835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38272-38794 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 382 72 -38794 bp Feature: gene Location: 38974-39774 bp Feature: domain Description: DAP_dppA_3 Location: 38977-39763 bp Feature: domain Description: DAP_dppA_3 Location: 38977-39763 bp Feature: gene Location: 40146-41240 bp Feature: domain Description: BioF Location: 40218-41232 bp Feature: domain Description: BioF Location: 402 18-412 32 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CspC (COG1278), DUF2384 (pfam09722), RVT-GII, DAP_dppA_3 (cd08770), BioF (COG0156)