myRT

myRT report for GCA_001427205.1_Root491

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Seq: LMFF01000012.1 Rhizobium sp. Root491 contig_2, whole genome shotgun sequence (860074 bp)
Overview 1 RT 1: 551116-554419 bp Neighborhood of RT #1 [551116, 554419] PHA00653 PHA00653 PHA00652 RVT-DGRs Feature: gene Location: 551116-552045 bp Feature: domain Description: PHA00653 Location: 551167-551890 bp Feature: domain Description: PHA00653 Location: 551 1 67-551 890 bp Feature: domain Description: PHA00653 Location: 551908-552040 bp Feature: domain Description: PHA00653 Location: 551 908-552040 bp Feature: gene Location: 552090-552467 bp Feature: domain Description: PHA00652 Location: 552123-552462 bp Feature: domain Description: PHA00652 Location: 5521 23-552462 bp Feature: gene Location: 552791-553801 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 553004-553655 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 553004-553655 bp Feature: gene Location: 553785-554078 bp Feature: gene Location: 554069-554419 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA00653 (mtd;major tropism determinant), PHA00652 (hypothetical protein), RVT-DGRs

Seq: LMFF01000007.1 Rhizobium sp. Root491 contig_15, whole genome shotgun sequence (36737 bp)
Overview 1 RT 1: 21670-26159 bp Neighborhood of RT #1 [21670, 26159] InsE PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 21670-21996 bp Feature: domain Description: InsE Location: 21679-21982 bp Feature: domain Description: InsE Location: 2 1679-2 1982 bp Feature: gene Location: 21993-22412 bp Feature: domain Description: PHA02517 Location: 22059-22413 bp Feature: domain Description: PHA02 517 Location: 2 2 059-2 2 413 bp Feature: gene Location: 23078-24589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23336-24068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 3336-2 4068 bp Feature: domain Description: GIIM Note: maturase Location: 24140-24368 bp Feature: domain Description: GIIM Note: maturase Location: 2 4140-2 4368 bp Feature: gene Location: 24657-25148 bp Feature: domain Description: PHA02517 Location: 24666-25146 bp Feature: domain Description: PHA02 517 Location: 2 4666-2 5146 bp Feature: gene Location: 25764-26159 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)