myRT

myRT report for GCA_001429215.1_Root267

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Seq: LMJC01000022.1 Acidovorax sp. Root267 contig_3, whole genome shotgun sequence (546444 bp)
Overview 1 RT 1: 229513-241614 bp Neighborhood of RT #1 [229513, 241676] DUF4166 yfcH dnaG RVT-UNC HTH_LacI PBP1_uncharacterized_sugar_binding HisM Feature: gene Location: 229513-230190 bp Ori: KRD18410.1 Feature: domain Description: DUF4166 Location: 229624-230170 bp Feature: domain Description: DUF41 66 Location: 229624-2301 70 bp Feature: gene Location: 230238-231752 bp Ori: KRD18411.1 Feature: domain Description: yfcH Location: 230808-231687 bp Feature: domain Description: yfcH Location: 230808-231 687 bp Feature: gene Location: 231810-239354 bp Ori: KRD18412.1 Feature: domain Description: dnaG Location: 231825-232866 bp Feature: domain Description: dnaG Location: 231 825-232866 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 234159-234405 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2341 59-234405 bp Feature: gene Location: 239657-240724 bp Ori: KRD18413.1 Feature: domain Description: HTH_LacI Location: 239711-239840 bp Feature: domain Description: HTH_LacI Location: 23971 1 -239840 bp Feature: domain Description: PBP1_uncharacterized_sugar_binding Location: 239876-240710 bp Feature: domain Description: PBP1 _uncharacterized_sugar_binding Location: 239876-24071 0 bp Feature: gene Location: 240993-241676 bp Ori: KRD18414.1 Feature: domain Description: HisM Location: 241020-241614 bp Feature: domain Description: HisM Location: 241 020-241 61 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4166 (pfam13761), yfcH (TIGR01777), dnaG (TIGR01391), RVT-UG10/RVT-DGRs/RVT-UG19/RVT-UG25(RVT-UNC), HTH_LacI (cd01392), PBP1_uncharacterized_sugar_binding, HisM (COG0765)

Seq: LMJC01000013.1 Acidovorax sp. Root267 contig_20, whole genome shotgun sequence (31790 bp)
Overview 1 RT 1: 22400-26529 bp Neighborhood of RT #1 [22400, 26540] CytB KOG3139 RVT-Retrons AHP1 rpsQ Feature: gene Location: 22400-23086 bp Ori: KRD21357.1 Feature: domain Description: CytB Location: 22418-22958 bp Feature: domain Description: CytB Location: 2 2 418-2 2 958 bp Feature: gene Location: 23133-23624 bp Ori: KRD21358.1 Feature: domain Description: KOG3139 Location: 23211-23607 bp Feature: domain Description: KOG3139 Location: 2 32 11-2 3607 bp Feature: gene Location: 23872-25461 bp Ori: KRD21359.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 24577-25237 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 4577-2 52 37 bp Feature: gene Location: 25606-26115 bp Ori: KRD21360.1 Feature: domain Description: AHP1 Location: 25609-26101 bp Feature: domain Description: AHP1 Location: 2 5609-2 6101 bp Feature: gene Location: 26271-26540 bp Ori: KRD21361.1 Feature: domain Description: rpsQ Location: 26289-26529 bp Feature: domain Description: rpsQ Location: 2 62 89-2 652 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CytB (COG3658), KOG3139 (KOG3139, N-acetyltransferase ), RVT-Retrons, AHP1 (COG0678), rpsQ (PRK05610)