myRT

myRT report for GCA_001429385.1_Root239

Download annotations/find similar RTs

Seq: LMJS01000014.1 Bacillus sp. Root239 contig_21, whole genome shotgun sequence (50766 bp)
Overview 1 RT 1: 25294-29695 bp Neighborhood of RT #1 [25294, 30108] FtsK Replic_Relax Replic_Relax RVT-UG14 HTH_XRE HTH_ARSR Feature: gene Location: 25294-26427 bp Ori: KRE04424.1 Feature: domain Description: FtsK Location: 25630-26197 bp Feature: domain Description: FtsK Location: 25630-261 97 bp Feature: gene Location: 26424-27119 bp Ori: KRE04425.1 Feature: domain Description: Replic_Relax Location: 26466-26607 bp Feature: domain Description: Replic_Relax Location: 26466-26607 bp Feature: domain Description: Replic_Relax Location: 26646-26904 bp Feature: domain Description: Replic_Relax Location: 26646-26904 bp Feature: gene Location: 27359-28912 bp Ori: KRE04426.1 Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 27710-28067 bp Feature: RT Description: RVT-UG1 4 Note: UG1 4 RT Location: 2771 0-28067 bp Feature: gene Location: 28938-29159 bp Ori: KRE04427.1 Feature: domain Description: HTH_XRE Location: 28965-29121 bp Feature: domain Description: HTH_XRE Location: 28965-291 21 bp Feature: gene Location: 29503-30108 bp Ori: KRE04428.1 Feature: domain Description: HTH_ARSR Location: 29548-29695 bp Feature: domain Description: HTH_ARSR Location: 29548-29695 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FtsK (COG1674), Replic_Relax (pfam13814), RVT-UG14, HTH_XRE (smart00530), HTH_ARSR (smart00418)

Seq: LMJS01000004.1 Bacillus sp. Root239 contig_12, whole genome shotgun sequence (167533 bp)
Overview 1 RT 1: 4301-9208 bp 2 RT 2: 37772-43191 bp 3 RT 3: 61571-66803 bp 4 RT 4: 130441-136687 bp Neighborhood of RT #1 [4301, 9208] DUF1738 RVT-GII Intron_maturas2 HNHc Neighborhood of RT #2 [37772, 43191] GATase1_PfpI_3 SMI1 RVT_N RVT-GII GIIM Neighborhood of RT #3 [61571, 66803] RVT-GII Intron_maturas2 HNHc Neighborhood of RT #4 [130441, 136698] MviM YolD RVT-GII GIIM YqgA HTH_BmrR BltR2 Feature: gene Location: 4301-4576 bp Feature: gene Location: 4569-5186 bp Ori: KRE07794.1 Feature: domain Description: DUF1738 Location: 4749-4929 bp Feature: domain Description: DUF1738 Location: 4749-492 9 bp Feature: gene Location: 5738-7555 bp Ori: KRE07795.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6002-6833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6002 -6833 bp Feature: domain Description: Intron_maturas2 Location: 6908-7232 bp Feature: domain Description: Intron_maturas2 Location: 6908-72 32 bp Feature: domain Description: HNHc Note: nucleases Location: 7352-7526 bp Feature: domain Description: HNHc Note: nucleases Location: 7352 -752 6 bp Feature: gene Location: 7743-8414 bp Feature: gene Location: 8474-9208 bp Feature: gene Location: 37772-38347 bp Ori: KRE07834.1 Feature: domain Description: GATase1_PfpI_3 Location: 37784-38291 bp Feature: domain Description: GATase1_PfpI_3 Location: 37784-382 91 bp Feature: gene Location: 38826-39308 bp Feature: domain Description: SMI1 Location: 38838-39306 bp Feature: domain Description: SMI1 Location: 38838-39306 bp Feature: gene Location: 40117-41766 bp Ori: KRE07835.1 Feature: domain Description: RVT_N Location: 40165-40411 bp Feature: domain Description: RVT_N Location: 40165-40411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40465-41125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40465-4112 5 bp Feature: domain Description: GIIM Note: maturase Location: 41194-41425 bp Feature: domain Description: GIIM Note: maturase Location: 41194-4142 5 bp Feature: gene Location: 42342-42572 bp Feature: gene Location: 42724-43191 bp Feature: gene Location: 61571-61846 bp Feature: gene Location: 61834-63342 bp Feature: gene Location: 63368-65221 bp Ori: KRE07863.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63632-64472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63632 -64472 bp Feature: domain Description: Intron_maturas2 Location: 64568-64904 bp Feature: domain Description: Intron_maturas2 Location: 64568-64904 bp Feature: domain Description: HNHc Note: nucleases Location: 65003-65168 bp Feature: domain Description: HNHc Note: nucleases Location: 65003-65168 bp Feature: gene Location: 65837-66535 bp Feature: gene Location: 66528-66803 bp Feature: gene Location: 130441-131433 bp Ori: KRE07930.1 Feature: domain Description: MviM Location: 130444-131425 bp Feature: domain Description: MviM Location: 130444-13142 5 bp Feature: gene Location: 131759-132091 bp Ori: KRE07931.1 Feature: domain Description: YolD Location: 131801-132080 bp Feature: domain Description: YolD Location: 131801-132 080 bp Feature: gene Location: 133343-134590 bp Ori: KRE07932.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 133346-133949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 133346-133949 bp Feature: domain Description: GIIM Note: maturase Location: 134018-134249 bp Feature: domain Description: GIIM Note: maturase Location: 134018-1342 49 bp Feature: gene Location: 135108-135791 bp Ori: KRE07933.1 Feature: domain Description: YqgA Location: 135111-135783 bp Feature: domain Description: YqgA Location: 135111-135783 bp Feature: gene Location: 135880-136698 bp Ori: KRE07934.1 Feature: domain Description: HTH_BmrR Location: 135895-136213 bp Feature: domain Description: HTH_BmrR Location: 135895-1362 13 bp Feature: domain Description: BltR2 Location: 136252-136687 bp Feature: domain Description: BltR2 Location: 1362 52 -136687 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1738 (pfam08401), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), GATase1_PfpI_3 (cd03140), SMI1 (COG4282), RVT_N (pfam13655), GIIM (pfam08388), MviM (COG0673), YolD (pfam08863)
YqgA (COG1811), HTH_BmrR (cd01107), BltR2 (COG4978)