myRT

myRT report for GCA_001431365.1_ASM143136v1

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Seq: LKTP01000021.1 Salegentibacter mishustinae strain KCTC 12263 contig28, whole genome shotgun sequence (2258 bp)
Overview 1 RT 1: 9-819 bp Neighborhood of RT #1 [9, 1649] RVT-UG12 Feature: gene Location: 9-1649 bp Ori: KRG28721.1 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 375-819 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 375-81 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG12

Seq: LKTP01000023.1 Salegentibacter mishustinae strain KCTC 12263 contig3, whole genome shotgun sequence (557018 bp)
Overview 1 RT 1: 531837-536093 bp Neighborhood of RT #1 [531837, 536125] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM COG3436 TnpB_IS66 Feature: gene Location: 531837-532346 bp Feature: gene Location: 532396-533166 bp Feature: domain Description: DDE_Tnp_IS66 Location: 532399-533020 bp Feature: domain Description: DDE_Tnp_IS66 Location: 532 399-53302 0 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 533041-533149 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 533041-533149 bp Feature: gene Location: 533260-534498 bp Ori: KRG28652.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 533473-534127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 533473-53412 7 bp Feature: domain Description: GIIM Note: maturase Location: 534205-534424 bp Feature: domain Description: GIIM Note: maturase Location: 5342 05-53442 4 bp Feature: gene Location: 535010-535729 bp Ori: KRG28653.1 Feature: domain Description: COG3436 Location: 535256-535706 bp Feature: domain Description: COG3436 Location: 5352 56-535706 bp Feature: gene Location: 535772-536125 bp Ori: KRG28654.1 Feature: domain Description: TnpB_IS66 Location: 535802-536093 bp Feature: domain Description: TnpB_IS66 Location: 535802 -536093 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), COG3436 (Transposase ), TnpB_IS66 (pfam05717)