myRT

myRT report for GCA_001432185.1_ASM143218v1

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Seq: LMVE01000048.1 Cylindrospermopsis sp. CR12 cyanobacteria_contig_23, whole genome shotgun sequence (203898 bp)
Overview 1 RT 1: 49458-55349 bp Neighborhood of RT #1 [49458, 55363] RNR_II_monomer RVT-GII GIIM RTPR DUF3598 Feature: gene Location: 49458-50066 bp Feature: gene Location: 50215-50478 bp Feature: domain Description: RNR_II_monomer Location: 50278-50473 bp Feature: domain Description: RNR_II_monomer Location: 50278-50473 bp Feature: gene Location: 51117-52340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51264-51882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 264-51 882 bp Feature: domain Description: GIIM Note: maturase Location: 51963-52197 bp Feature: domain Description: GIIM Note: maturase Location: 51 963-521 97 bp Feature: gene Location: 52521-54479 bp Feature: domain Description: RTPR Location: 52524-54453 bp Feature: domain Description: RTPR Location: 52524-54453 bp Feature: gene Location: 54509-55363 bp Feature: domain Description: DUF3598 Location: 54518-55349 bp Feature: domain Description: DUF3598 Location: 5451 8-55349 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RNR_II_monomer (cd01676), RVT-GII, GIIM (pfam08388), RTPR (TIGR02505), DUF3598 (pfam12204)

Seq: LMVE01000107.1 Cylindrospermopsis sp. CR12 cyanobacteria_contig_50, whole genome shotgun sequence (89515 bp)
Overview 1 RT 1: 40925-43623 bp Neighborhood of RT #1 [40925, 43634] CpeS RVT_N RVT-GII RVT-GII GIIM CpeS cyt_b559_alpha Feature: gene Location: 40925-41191 bp Feature: domain Description: CpeS Location: 40931-41159 bp Feature: domain Description: CpeS Location: 40931-41159 bp Feature: gene Location: 41188-41367 bp Feature: gene Location: 41715-42815 bp Feature: RT Description: RVT_N Location: 41751-41922 bp Feature: RT Description: RVT_N Location: 41751-4192 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41943-42297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41943-42 2 97 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42297-42462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 2 97-42 462 bp Feature: domain Description: GIIM Note: maturase Location: 42522-42714 bp Feature: domain Description: GIIM Note: maturase Location: 42 52 2 -42 714 bp Feature: gene Location: 42978-43232 bp Feature: domain Description: CpeS Location: 42981-43179 bp Feature: domain Description: CpeS Location: 42 981-43179 bp Feature: gene Location: 43386-43634 bp Feature: domain Description: cyt_b559_alpha Location: 43392-43623 bp Feature: domain Description: cyt_b559_alpha Location: 43392 -4362 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CpeS (pfam09367), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), cyt_b559_alpha (TIGR01332)

Seq: LMVE01000042.1 Cylindrospermopsis sp. CR12 cyanobacteria_contig_2, whole genome shotgun sequence (279631 bp)
Overview 1 RT 1: 200639-205720 bp Neighborhood of RT #1 [200639, 205782] DUF3157 RVT_N RVT-GII GIIM QueC MviM Feature: gene Location: 200639-201343 bp Feature: domain Description: DUF3157 Location: 201023-201173 bp Feature: domain Description: DUF3 157 Location: 201023 -201173 bp Feature: gene Location: 201658-201840 bp Feature: gene Location: 202005-203705 bp Feature: RT Description: RVT_N Location: 202032-202242 bp Feature: RT Description: RVT_N Location: 20203 2-202242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 202296-202977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 202296-202977 bp Feature: domain Description: GIIM Note: maturase Location: 203079-203310 bp Feature: domain Description: GIIM Note: maturase Location: 203 079-203 3 10 bp Feature: gene Location: 203838-204506 bp Feature: domain Description: QueC Location: 203841-204498 bp Feature: domain Description: QueC Location: 203 841-204498 bp Feature: gene Location: 204703-205782 bp Feature: domain Description: MviM Location: 204769-205720 bp Feature: domain Description: MviM Location: 204769-205720 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3157 (pfam11355), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), QueC (pfam06508), MviM (COG0673)

Seq: LMVE01000114.1 Cylindrospermopsis sp. CR12 cyanobacteria_contig_55, whole genome shotgun sequence (36340 bp)
Overview 1 RT 1: 27138-32475 bp Neighborhood of RT #1 [27138, 32507] DppC KOG0404 TRX_NTR RVT_N RVT-GII GIIM KOG0404 N_methyl Pilin_GH Feature: gene Location: 27138-28019 bp Feature: domain Description: DppC Location: 27183-28011 bp Feature: domain Description: DppC Location: 27183-28011 bp Feature: gene Location: 28156-29310 bp Feature: domain Description: KOG0404 Location: 28159-28891 bp Feature: domain Description: KOG04 04 Location: 28159-28891 bp Feature: domain Description: TRX_NTR Location: 29011-29296 bp Feature: domain Description: TRX_NTR Location: 29011-29296 bp Feature: gene Location: 29376-30926 bp Feature: RT Description: RVT_N Location: 29460-29643 bp Feature: RT Description: RVT_N Location: 294 60-2964 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29718-30324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29718-30324 bp Feature: domain Description: GIIM Note: maturase Location: 30447-30669 bp Feature: domain Description: GIIM Note: maturase Location: 304 4 7-30669 bp Feature: gene Location: 31580-31768 bp Feature: domain Description: KOG0404 Location: 31610-31757 bp Feature: domain Description: KOG04 04 Location: 31610-31757 bp Feature: gene Location: 31983-32507 bp Feature: domain Description: N_methyl Location: 32043-32112 bp Feature: domain Description: N_methyl Location: 3204 3-32112 bp Feature: domain Description: Pilin_GH Location: 32148-32475 bp Feature: domain Description: Pilin_GH Location: 3214 8-324 75 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DppC (COG1173), KOG0404 (KOG0404, Thioredoxin reductase ), TRX_NTR (cd02949), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), N_methyl (pfam07963), Pilin_GH (pfam16734)