myRT

myRT report for GCA_001433765.1_ASM143376v1

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Seq: AZCN01000033.1 Lactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM 20001 Scaffold33, whole genome shotgun sequence (28677 bp)
Overview 1 RT 1: 22605-27347 bp Neighborhood of RT #1 [22605, 27347] PRK13502 YesN benzyl_alcohol_DH RVT-GII GIIM Feature: gene Location: 22605-23597 bp Ori: KRK16372.1 Feature: domain Description: PRK13502 Location: 22740-23010 bp Feature: domain Description: PRK1 3502 Location: 22740-2301 0 bp Feature: domain Description: YesN Location: 23187-23586 bp Feature: domain Description: YesN Location: 231 87-23586 bp Feature: gene Location: 23805-24926 bp Ori: KRK16373.1 Feature: domain Description: benzyl_alcohol_DH Location: 23811-24894 bp Feature: domain Description: benzyl_alcohol_DH Location: 2381 1 -24894 bp Feature: gene Location: 25029-26417 bp Ori: KRK16374.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25350-25965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25350-25965 bp Feature: domain Description: GIIM Note: maturase Location: 26025-26226 bp Feature: domain Description: GIIM Note: maturase Location: 26025-26226 bp Feature: gene Location: 26895-27125 bp Feature: gene Location: 27153-27347 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13502 (HTH-type transcriptional activator RhaR), YesN (COG4753), benzyl_alcohol_DH (cd08278), RVT-GII, GIIM (pfam08388)

Seq: AZCN01000030.1 Lactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM 20001 Scaffold30, whole genome shotgun sequence (28859 bp)
Overview 1 RT 1: 15965-21240 bp Neighborhood of RT #1 [15965, 21350] HTH_XRE Rol_Rep_N Rep_trans RVT-UNC FtsK Feature: gene Location: 15965-16234 bp Feature: gene Location: 16282-17481 bp Ori: KRK16616.1 Feature: domain Description: HTH_XRE Location: 16297-16432 bp Feature: domain Description: HTH_XRE Location: 162 97-16432 bp Feature: domain Description: Rol_Rep_N Location: 16477-16744 bp Feature: domain Description: Rol_Rep_N Location: 16477-16744 bp Feature: domain Description: Rep_trans Location: 16768-17362 bp Feature: domain Description: Rep_trans Location: 16768-17362 bp Feature: gene Location: 17793-19622 bp Ori: KRK16617.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 18336-18777 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 18336-18777 bp Feature: gene Location: 19674-19952 bp Feature: gene Location: 19974-21350 bp Ori: KRK16619.1 Feature: domain Description: FtsK Location: 20667-21240 bp Feature: domain Description: FtsK Location: 2 0667-2 12 40 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), RVT-UG10/RVT-UG12/RVT-UG19/RVT-UG25(RVT-UNC), FtsK (COG1674)

Seq: AZCN01000029.1 Lactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM 20001 Scaffold29, whole genome shotgun sequence (29511 bp)
Overview 1 RT 1: 208-4264 bp Neighborhood of RT #1 [208, 4332] ABC2_membrane gpmA RVT-Retrons Arm-DNA-bind_4 Phage_int_SAM_5 INT_ICEBs1_C_like Feature: gene Location: 208-909 bp Ori: KRK16695.1 Feature: domain Description: ABC2_membrane Location: 241-802 bp Feature: domain Description: ABC2_membrane Location: 241-802 bp Feature: gene Location: 967-1248 bp Ori: KRK16696.1 Feature: domain Description: gpmA Location: 1030-1243 bp Feature: domain Description: gpmA Location: 103 0-1243 bp Feature: gene Location: 1388-2323 bp Ori: KRK16697.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1541-2087 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1541-2087 bp Feature: gene Location: 2326-2478 bp Feature: gene Location: 3133-4332 bp Ori: KRK16699.1 Feature: domain Description: Arm-DNA-bind_4 Location: 3268-3361 bp Feature: domain Description: Arm-DNA-bind_4 Location: 3 268-3 3 61 bp Feature: domain Description: Phage_int_SAM_5 Location: 3394-3649 bp Feature: domain Description: Phage_int_SAM_5 Location: 3 3 94-3 649 bp Feature: domain Description: INT_ICEBs1_C_like Location: 3778-4264 bp Feature: domain Description: INT_ICEBs1_C_like Location: 3 778-4264 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC2_membrane (pfam01061), gpmA (PRK14120), RVT-Retrons, Arm-DNA-bind_4 (pfam14657), Phage_int_SAM_5 (pfam13102), INT_ICEBs1_C_like (cd01189)