myRT

myRT report for GCA_001433815.1_ASM143381v1

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Seq: AZCL01000020.1 Lactobacillus pobuzihii E100301 = KCTC 13174 Scaffold20, whole genome shotgun sequence (38311 bp)
Overview 1 RT 1: 1081-8452 bp 2 RT 2: 24474-29334 bp Neighborhood of RT #1 [1081, 8982] DHAK_reg YdfJ RVT-GII DDE_Tnp_IS66 DDE_Tnp_IS66_C MobA_MobL NES_C_h NES_C_h Neighborhood of RT #2 [24474, 29334] zeta_crystallin RVT-GII GIIM ParAB_family Feature: gene Location: 1081-1644 bp Ori: KRK09375.1 Feature: domain Description: DHAK_reg Location: 1159-1606 bp Feature: domain Description: DHAK_reg Location: 1 1 59-1 606 bp Feature: gene Location: 1793-4492 bp Ori: KRK09376.1 Feature: domain Description: YdfJ Location: 1820-4415 bp Feature: domain Description: YdfJ Location: 1 820-441 5 bp Feature: gene Location: 5312-5770 bp Ori: KRK09377.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5630-5756 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5630-5756 bp Feature: gene Location: 6039-6539 bp Ori: KRK09378.1 Feature: domain Description: DDE_Tnp_IS66 Location: 6045-6354 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6045-6354 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 6372-6495 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 6372-6495 bp Feature: gene Location: 6925-8982 bp Ori: KRK09379.1 Feature: domain Description: MobA_MobL Location: 6976-7639 bp Feature: domain Description: MobA_MobL Location: 6976-7639 bp Feature: domain Description: NES_C_h Location: 7750-8074 bp Feature: domain Description: NES_C_h Location: 7750-8074 bp Feature: domain Description: NES_C_h Location: 8278-8452 bp Feature: domain Description: NES_C_h Location: 8278-8452 bp Feature: gene Location: 24474-24779 bp Feature: gene Location: 24896-25873 bp Ori: KRK09401.1 Feature: domain Description: zeta_crystallin Location: 24899-25829 bp Feature: domain Description: zeta_crystallin Location: 24899-25829 bp Feature: gene Location: 26075-27469 bp Ori: KRK09402.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26402-27020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26402-27020 bp Feature: domain Description: GIIM Note: maturase Location: 27074-27290 bp Feature: domain Description: GIIM Note: maturase Location: 27074-27290 bp Feature: gene Location: 28294-29112 bp Ori: KRK09403.1 Feature: domain Description: ParAB_family Location: 28339-28933 bp Feature: domain Description: ParAB_family Location: 28339-28933 bp Feature: gene Location: 29119-29334 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DHAK_reg (TIGR02366), YdfJ (COG2409), RVT-GII, DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), MobA_MobL (pfam03389), NES_C_h (pfam18208), zeta_crystallin (cd08253), GIIM (pfam08388), ParAB_family (cd02042)