myRT

myRT report for GCA_001434005.1_ASM143400v1

Download annotations/find similar RTs

Seq: AZCW01000036.1 Lactobacillus crispatus DSM 20584 = JCM 1185 strain DSM 20584 Scaffold36, whole genome shotgun sequence (20326 bp)
Overview 1 RT 1: 13500-16279 bp Neighborhood of RT #1 [13500, 16284] Tra8 group_II_RT_mat RVT-GII ribH Feature: gene Location: 13500-14141 bp Ori: KRK33613.1 Feature: domain Description: Tra8 Location: 13560-14025 bp Feature: domain Description: Tra8 Location: 1 3560-1 4025 bp Feature: gene Location: 15013-15195 bp Ori: KRK33614.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 15046-15169 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 5046-1 51 69 bp Feature: gene Location: 15321-15545 bp Ori: KRK33615.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15324-15402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5324-1 5402 bp Feature: gene Location: 15545-15742 bp Feature: gene Location: 15820-16284 bp Ori: KRK33617.1 Feature: domain Description: ribH Location: 15823-16279 bp Feature: domain Description: ribH Location: 1 5823-1 6279 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra8 (COG2826), group_II_RT_mat (TIGR04416), RVT-GII, ribH (PRK00061)

Seq: AZCW01000032.1 Lactobacillus crispatus DSM 20584 = JCM 1185 strain DSM 20584 Scaffold32, whole genome shotgun sequence (23286 bp)
Overview 1 RT 1: 1633-5917 bp Neighborhood of RT #1 [1633, 5973] DHDPS-like PurR RVT-GII GIIM DUF3100 Feature: gene Location: 1633-2592 bp Ori: KRK33729.1 Feature: domain Description: DHDPS-like Location: 1663-2545 bp Feature: domain Description: DHDPS-like Location: 1663-2 545 bp Feature: gene Location: 2606-3598 bp Ori: KRK33730.1 Feature: domain Description: PurR Location: 2612-3596 bp Feature: domain Description: PurR Location: 2 612 -3596 bp Feature: gene Location: 4109-4540 bp Ori: KRK33731.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4118-4310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4118-4310 bp Feature: domain Description: GIIM Note: maturase Location: 4364-4535 bp Feature: domain Description: GIIM Note: maturase Location: 4364-4535 bp Feature: gene Location: 4680-5171 bp Feature: gene Location: 5164-5973 bp Ori: KRK33733.1 Feature: domain Description: DUF3100 Location: 5215-5917 bp Feature: domain Description: DUF3100 Location: 52 15-5917 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DHDPS-like (cd00408), PurR (COG1609), RVT-GII, GIIM (pfam08388), DUF3100 (pfam11299)

Seq: AZCW01000018.1 Lactobacillus crispatus DSM 20584 = JCM 1185 strain DSM 20584 Scaffold18, whole genome shotgun sequence (31706 bp)
Overview 1 RT 1: 25178-31119 bp Neighborhood of RT #1 [25178, 31119] scrB_fam HTH_LacI PBP1_Qymf_like RVT-GII GIIM SunT Feature: gene Location: 25178-26635 bp Ori: KRK34704.1 Feature: domain Description: scrB_fam Location: 25244-26555 bp Feature: domain Description: scrB_fam Location: 25244-26555 bp Feature: gene Location: 26651-27637 bp Ori: KRK34705.1 Feature: domain Description: HTH_LacI Location: 26672-26819 bp Feature: domain Description: HTH_LacI Location: 26672-26819 bp Feature: domain Description: PBP1_Qymf_like Location: 26837-27632 bp Feature: domain Description: PBP1_Qymf_like Location: 2683 7-2763 2 bp Feature: gene Location: 27951-29006 bp Ori: KRK34706.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28152-28770 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28152-28770 bp Feature: domain Description: GIIM Note: maturase Location: 28827-28959 bp Feature: domain Description: GIIM Note: maturase Location: 28827-28959 bp Feature: gene Location: 29613-30950 bp Ori: KRK34708.1 Feature: domain Description: SunT Location: 29697-30942 bp Feature: domain Description: SunT Location: 29697-3 0942 bp Feature: gene Location: 30949-31119 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT scrB_fam (TIGR01322), HTH_LacI (cd01392), PBP1_Qymf_like, RVT-GII, GIIM (pfam08388), SunT (COG2274)