myRT

myRT report for GCA_001437255.1_ASM143725v1

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Seq: JQBD01000031.1 Pediococcus damnosus strain DSM 20331 Scaffold31, whole genome shotgun sequence (20248 bp)
Overview 1 RT 1: 129-2552 bp Neighborhood of RT #1 [129, 2560] RVT-GII RVT-GII GIIM ManX PRK09855 Feature: gene Location: 129-860 bp Ori: KRN51598.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132-201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 32-201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 204-414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 204-41 4 bp Feature: domain Description: GIIM Note: maturase Location: 471-696 bp Feature: domain Description: GIIM Note: maturase Location: 471 -696 bp Feature: gene Location: 1260-1703 bp Ori: KRN51599.1 Feature: domain Description: ManX Location: 1275-1683 bp Feature: domain Description: ManX Location: 1 275-1 683 bp Feature: gene Location: 1730-2560 bp Ori: KRN51600.1 Feature: domain Description: PRK09855 Location: 1781-2552 bp Feature: domain Description: PRK09855 Location: 1 781 -2552 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), ManX (COG2893), PRK09855 (PTS N-acetylgalactosamine transporter subunit IID)

Seq: JQBD01000168.1 Pediococcus damnosus strain DSM 20331 Scaffold168, whole genome shotgun sequence (878 bp)
Overview 1 RT 1: 24-690 bp Neighborhood of RT #1 [24, 854] RVT-GII GIIM Feature: gene Location: 24-854 bp Ori: KRN43565.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27-408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 7-408 bp Feature: domain Description: GIIM Note: maturase Location: 465-690 bp Feature: domain Description: GIIM Note: maturase Location: 465-690 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JQBD01000085.1 Pediococcus damnosus strain DSM 20331 Scaffold85, whole genome shotgun sequence (7884 bp)
Overview 1 RT 1: 1200-7524 bp Neighborhood of RT #1 [1200, 7787] PemK_toxin HsdM RVT-AbiP2 DUF536 Rep_3 Feature: gene Location: 1200-1544 bp Ori: KRN47298.1 Feature: domain Description: PemK_toxin Location: 1212-1503 bp Feature: domain Description: PemK_toxin Location: 1212-1503 bp Feature: gene Location: 1690-4470 bp Ori: KRN47299.1 Feature: domain Description: HsdM Location: 2470-3241 bp Feature: domain Description: HsdM Location: 2470-3 241 bp Feature: gene Location: 4658-6145 bp Ori: KRN47300.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 5060-5513 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 5060-5513 bp Feature: gene Location: 6236-6859 bp Ori: KRN47301.1 Feature: domain Description: DUF536 Location: 6524-6662 bp Feature: domain Description: DUF53 6 Location: 6524-6662 bp Feature: gene Location: 6852-7787 bp Ori: KRN47302.1 Feature: domain Description: Rep_3 Location: 6861-7524 bp Feature: domain Description: Rep_3 Location: 6861-7524 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PemK_toxin (pfam02452), HsdM (COG0286), RVT-AbiP2, DUF536 (pfam04394), Rep_3 (pfam01051)