myRT

myRT report for GCA_001438865.1_ASM143886v1

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Seq: JQCN01000002.1 Lactobacillus pobuzihii strain NBRC 103219 NODE_2, whole genome shotgun sequence (37991 bp)
Overview 1 RT 1: 77-4822 bp 2 RT 2: 20167-28081 bp Neighborhood of RT #1 [77, 4822] ParAB_family RVT-GII GIIM zeta_crystallin Neighborhood of RT #2 [20167, 28119] MobA_MobL NES_C_h NES_C_h DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII YdfJ DHAK_reg Feature: gene Location: 77-292 bp Feature: gene Location: 299-1117 bp Ori: KRO02537.1 Feature: domain Description: ParAB_family Location: 344-938 bp Feature: domain Description: ParAB_family Location: 344-938 bp Feature: gene Location: 1827-3221 bp Ori: KRO02538.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2154-2772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 54-2772 bp Feature: domain Description: GIIM Note: maturase Location: 2826-3042 bp Feature: domain Description: GIIM Note: maturase Location: 2826-3042 bp Feature: gene Location: 3423-4400 bp Ori: KRO02539.1 Feature: domain Description: zeta_crystallin Location: 3426-4356 bp Feature: domain Description: zeta_crystallin Location: 3426-4356 bp Feature: gene Location: 4517-4822 bp Feature: gene Location: 20167-22275 bp Ori: KRO02561.1 Feature: domain Description: MobA_MobL Location: 20269-20932 bp Feature: domain Description: MobA_MobL Location: 20269-20932 bp Feature: domain Description: NES_C_h Location: 21043-21367 bp Feature: domain Description: NES_C_h Location: 21 043-21 367 bp Feature: domain Description: NES_C_h Location: 21571-21745 bp Feature: domain Description: NES_C_h Location: 21 571 -21 745 bp Feature: gene Location: 22661-23161 bp Ori: KRO02562.1 Feature: domain Description: DDE_Tnp_IS66 Location: 22667-22976 bp Feature: domain Description: DDE_Tnp_IS66 Location: 22667-22976 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 22994-23117 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 22994-231 1 7 bp Feature: gene Location: 23430-23888 bp Ori: KRO02563.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23748-23874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23748-23874 bp Feature: gene Location: 24708-27407 bp Ori: KRO02564.1 Feature: domain Description: YdfJ Location: 24735-27330 bp Feature: domain Description: YdfJ Location: 24735-27330 bp Feature: gene Location: 27556-28119 bp Ori: KRO02565.1 Feature: domain Description: DHAK_reg Location: 27634-28081 bp Feature: domain Description: DHAK_reg Location: 27634-28081 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParAB_family (cd02042), RVT-GII, GIIM (pfam08388), zeta_crystallin (cd08253), MobA_MobL (pfam03389), NES_C_h (pfam18208), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), YdfJ (COG2409), DHAK_reg (TIGR02366)