myRT

myRT report for GCA_001439695.1_G8123

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Seq: JYLL01000006.1 Pseudomonas veronii strain DSM 11331 6_348433_23.6417, whole genome shotgun sequence (348433 bp)
Overview 1 RT 1: 288876-292699 bp Neighborhood of RT #1 [288876, 292746] clpP tig RVT_N RVT-GII GIIM HNH Feature: gene Location: 288876-289511 bp Feature: domain Description: clpP Location: 288930-289503 bp Feature: domain Description: clpP Location: 288930-289503 bp Feature: gene Location: 289603-290913 bp Feature: domain Description: tig Location: 289606-290884 bp Feature: domain Description: tig Location: 289606-290884 bp Feature: gene Location: 291043-292746 bp Feature: RT Description: RVT_N Location: 291100-291343 bp Feature: RT Description: RVT_N Location: 291 1 00-291 343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 291388-292024 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 291 388-292024 bp Feature: domain Description: GIIM Note: maturase Location: 292075-292309 bp Feature: domain Description: GIIM Note: maturase Location: 292075-292309 bp Feature: domain Description: HNH Note: nucleases Location: 292561-292699 bp Feature: domain Description: HNH Note: nucleases Location: 292561 -292699 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT clpP, tig (TIGR00115), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: JYLL01000015.1 Pseudomonas veronii strain DSM 11331 15_143367_30.9535, whole genome shotgun sequence (143367 bp)
Overview 1 RT 1: 291-4162 bp 2 RT 2: 136519-143052 bp Neighborhood of RT #1 [291, 4162] HEPN_MAE_28990 DUF262 RVT-Retrons HTH_XRE Neighborhood of RT #2 [136519, 143348] COG4271 CHD CHD RVT-GII GIIM DUF772 Feature: gene Location: 291-938 bp Feature: domain Description: HEPN_MAE_28990 Location: 312-930 bp Feature: domain Description: HEPN_MAE_2 8990 Location: 312 -930 bp Feature: gene Location: 943-2010 bp Feature: domain Description: DUF262 Location: 1042-1465 bp Feature: domain Description: DUF2 62 Location: 1042 -1465 bp Feature: gene Location: 2403-2990 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2412-2670 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 412 -2 670 bp Feature: gene Location: 3427-3738 bp Feature: domain Description: HTH_XRE Location: 3442-3601 bp Feature: domain Description: HTH_XRE Location: 3442 -3601 bp Feature: gene Location: 3779-4162 bp Feature: gene Location: 136519-137430 bp Feature: domain Description: COG4271 Location: 136744-137413 bp Feature: domain Description: COG42 71 Location: 136744-137413 bp Feature: gene Location: 137511-139055 bp Feature: domain Description: CHD Location: 137727-138141 bp Feature: domain Description: CHD Location: 13772 7-138141 bp Feature: domain Description: CHD Location: 138369-138858 bp Feature: domain Description: CHD Location: 138369-138858 bp Feature: gene Location: 141050-142318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141263-141920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1412 63-14192 0 bp Feature: domain Description: GIIM Note: maturase Location: 141998-142220 bp Feature: domain Description: GIIM Note: maturase Location: 141998-142 2 2 0 bp Feature: gene Location: 142707-143348 bp Feature: domain Description: DUF772 Location: 142857-143052 bp Feature: domain Description: DUF772 Location: 142 857-143052 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HEPN_MAE_28990 (pfam18737), DUF262 (pfam03235), COG4271 (Predicted nucleotide-binding protein containing TIR -like domain ), CHD (cd07302), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598)

Seq: JYLL01000049.1 Pseudomonas veronii strain DSM 11331 49_34150_29.9253, whole genome shotgun sequence (34150 bp)
Overview 1 RT 1: 2912-11526 bp Neighborhood of RT #1 [2912, 11526] ACR3 RVT_N RVT-GII GIIM TnpB_IS66 Feature: gene Location: 2912-3202 bp Feature: gene Location: 4597-5559 bp Feature: domain Description: ACR3 Location: 4612-5539 bp Feature: domain Description: ACR3 Location: 4612-553 9 bp Feature: gene Location: 5924-7585 bp Feature: RT Description: RVT_N Location: 5969-6212 bp Feature: RT Description: RVT_N Location: 5969-6212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6257-6893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6257-6893 bp Feature: domain Description: GIIM Note: maturase Location: 6950-7178 bp Feature: domain Description: GIIM Note: maturase Location: 6950-7178 bp Feature: gene Location: 9533-9868 bp Feature: domain Description: TnpB_IS66 Location: 9551-9839 bp Feature: domain Description: TnpB_IS66 Location: 9551-983 9 bp Feature: gene Location: 11149-11526 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ACR3 (COG0798), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TnpB_IS66 (pfam05717)