myRT

myRT report for GCA_001439745.1_MG775

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Seq: JYLP01000030.1 Pseudomonas lactis strain DSM 29142 30_51257_5.41066, whole genome shotgun sequence (51257 bp)
Overview 1 RT 1: 26487-34920 bp Neighborhood of RT #1 [26487, 34988] PLDc_Bfil_DEXD_like COG3547 RVT_N RVT-GII GIIM LMWP_ArsC Feature: gene Location: 26487-27527 bp Ori: KRP85372.1 Feature: domain Description: PLDc_Bfil_DEXD_like Location: 26511-26850 bp Feature: domain Description: PLDc_Bfil_DEXD_like Location: 2651 1 -26850 bp Feature: gene Location: 28693-29709 bp Ori: KRP85373.1 Feature: domain Description: COG3547 Location: 28711-29668 bp Feature: domain Description: COG3547 Location: 2871 1 -29668 bp Feature: gene Location: 30419-31924 bp Ori: KRP85374.1 Feature: domain Description: RVT_N Location: 30497-30731 bp Feature: domain Description: RVT_N Location: 30497-30731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30776-31418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30776-31 41 8 bp Feature: domain Description: GIIM Note: maturase Location: 31469-31703 bp Feature: domain Description: GIIM Note: maturase Location: 31 469-31 703 bp Feature: gene Location: 33767-34441 bp Feature: gene Location: 34518-34988 bp Ori: KRP85375.1 Feature: domain Description: LMWP_ArsC Location: 34524-34920 bp Feature: domain Description: LMWP_ArsC Location: 34524-34920 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PLDc_Bfil_DEXD_like (cd09117), COG3547 (Transposase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), LMWP_ArsC (cd16345)

Seq: JYLP01000035.1 Pseudomonas lactis strain DSM 29142 35_29840_5.51038, whole genome shotgun sequence (29840 bp)
Overview 1 RT 1: 1426-6890 bp Neighborhood of RT #1 [1426, 6890] Prim_Zn_Ribbon Toprim_3 RVT-GII GIIM Feature: gene Location: 1426-2214 bp Feature: gene Location: 2348-3487 bp Ori: KRP84211.1 Feature: domain Description: Prim_Zn_Ribbon Location: 2465-2597 bp Feature: domain Description: Prim_Zn_Ribbon Location: 2 465-2 597 bp Feature: domain Description: Toprim_3 Location: 3152-3452 bp Feature: domain Description: Toprim_3 Location: 3152 -3452 bp Feature: gene Location: 4238-5530 bp Ori: KRP84225.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4499-5111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4499-5111 bp Feature: domain Description: GIIM Note: maturase Location: 5168-5390 bp Feature: domain Description: GIIM Note: maturase Location: 5168-5390 bp Feature: gene Location: 5704-6435 bp Feature: gene Location: 6447-6890 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Prim_Zn_Ribbon (smart00778), Toprim_3 (pfam13362), RVT-GII, GIIM (pfam08388)

Seq: JYLP01000018.1 Pseudomonas lactis strain DSM 29142 18_134245_22.444, whole genome shotgun sequence (134245 bp)
Overview 1 RT 1: 18651-27055 bp Neighborhood of RT #1 [18651, 27108] Acetyltransf_7 Acetyltransf_3 RVT-UG5 RVT-G2L4 Acetyltransf_1 Feature: gene Location: 18651-19145 bp Ori: KRP88733.1 Feature: domain Description: Acetyltransf_7 Location: 18840-19062 bp Feature: domain Description: Acetyltransf_7 Location: 18840-19062 bp Feature: gene Location: 19264-19779 bp Ori: KRP88734.1 Feature: domain Description: Acetyltransf_3 Location: 19306-19711 bp Feature: domain Description: Acetyltransf_3 Location: 193 06-19711 bp Feature: gene Location: 20926-22866 bp Ori: KRP88735.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 21391-21910 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 213 91-21910 bp Feature: gene Location: 23163-24425 bp Ori: KRP88736.1 Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 23382-23967 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 23 3 82-23 967 bp Feature: gene Location: 25988-26221 bp Feature: gene Location: 26659-27108 bp Ori: KRP88738.1 Feature: domain Description: Acetyltransf_1 Location: 26794-27055 bp Feature: domain Description: Acetyltransf_1 Location: 26794-27055 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Acetyltransf_7 (pfam13508), Acetyltransf_3 (pfam13302), RVT-UG5, RVT-G2L4, Acetyltransf_1 (pfam00583)

Seq: JYLP01000036.1 Pseudomonas lactis strain DSM 29142 36_27677_25.5768, whole genome shotgun sequence (27677 bp)
Overview 1 RT 1: 18507-27064 bp Neighborhood of RT #1 [18507, 27064] ACR3 RVT_N RVT-GII GIIM TnpB_IS66 Feature: gene Location: 18507-18797 bp Feature: gene Location: 20192-21154 bp Ori: KRP84203.1 Feature: domain Description: ACR3 Location: 20207-21134 bp Feature: domain Description: ACR3 Location: 20207-21134 bp Feature: gene Location: 21519-23180 bp Ori: KRP84204.1 Feature: domain Description: RVT_N Location: 21564-21807 bp Feature: domain Description: RVT_N Location: 21564 -21807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21852-22488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21852-224 88 bp Feature: domain Description: GIIM Note: maturase Location: 22545-22773 bp Feature: domain Description: GIIM Note: maturase Location: 2254 5-22773 bp Feature: gene Location: 25128-25463 bp Ori: KRP84205.1 Feature: domain Description: TnpB_IS66 Location: 25146-25434 bp Feature: domain Description: TnpB_IS66 Location: 2514 6-254 34 bp Feature: gene Location: 26459-27064 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ACR3 (COG0798), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TnpB_IS66 (pfam05717)