myRT

myRT report for GCA_001440015.1_BR3262k88v1

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Seq: LJYE01000101.1 Bradyrhizobium pachyrhizi strain BR3262 contig2271, whole genome shotgun sequence (152174 bp)
Overview 1 RT 1: 403-7368 bp Neighborhood of RT #1 [403, 7589] DUF4096 RVT-GII INT_RitC_C_like FrhB Feature: gene Location: 403-783 bp Feature: domain Description: DUF4096 Location: 430-649 bp Feature: domain Description: DUF4096 Location: 430-649 bp Feature: gene Location: 1678-1852 bp Feature: gene Location: 2920-4245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3175-3862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 75-3862 bp Feature: gene Location: 4862-5062 bp Feature: domain Description: INT_RitC_C_like Location: 4865-4991 bp Feature: domain Description: INT_RitC_C_like Location: 4865-4991 bp Feature: gene Location: 6318-7589 bp Feature: domain Description: FrhB Location: 6390-7368 bp Feature: domain Description: FrhB Location: 6390-7368 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DUF4096 (pfam13340), FrhB (COG1035)

Seq: LJYE01000114.1 Bradyrhizobium pachyrhizi strain BR3262 contig2284, whole genome shotgun sequence (39004 bp)
Overview 1 RT 1: 15575-20281 bp Neighborhood of RT #1 [15575, 21018] HTH_Tnp_1 RVT-GII GIIM TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 Feature: gene Location: 15575-15754 bp Feature: gene Location: 16762-17190 bp Feature: domain Description: HTH_Tnp_1 Location: 16804-16960 bp Feature: domain Description: HTH_Tnp_1 Location: 16804-16960 bp Feature: gene Location: 17976-19202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18138-18795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18138-18795 bp Feature: domain Description: GIIM Note: maturase Location: 18876-19101 bp Feature: domain Description: GIIM Note: maturase Location: 18876-19101 bp Feature: gene Location: 19301-19519 bp Feature: domain Description: TnpB_IS66 Location: 19406-19511 bp Feature: domain Description: TnpB_IS66 Location: 19406-19511 bp Feature: gene Location: 19585-21018 bp Feature: domain Description: LZ_Tnp_IS66 Location: 19732-19963 bp Feature: domain Description: LZ_Tnp_IS66 Location: 19732 -19963 bp Feature: domain Description: zf-IS66 Location: 19978-20113 bp Feature: domain Description: zf-IS66 Location: 19978-2 0113 bp Feature: domain Description: DDE_Tnp_IS66 Location: 20158-20281 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2 0158-2 02 81 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), RVT-GII, GIIM (pfam08388), TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050)