myRT

myRT report for GCA_001440385.1_ASM144038v1

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Seq: LLXY01000072.1 Bradyrhizobium valentinum strain LmjM6 contig_163, whole genome shotgun sequence (5297 bp)
Overview 1 RT 1: 1-5031 bp Neighborhood of RT #1 [1, 5114] DUF772 RVT-GII COG5659 HTH_32 DDE_3 Feature: gene Location: 1-410 bp Feature: domain Description: DUF772 Location: 160-382 bp Feature: domain Description: DUF772 Location: 1 60-382 bp Feature: gene Location: 866-2398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1274-1964 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 274-1 964 bp Feature: gene Location: 2488-3792 bp Feature: domain Description: COG5659 Location: 2515-3694 bp Feature: domain Description: COG5659 Location: 251 5-3694 bp Feature: gene Location: 3969-5114 bp Feature: domain Description: HTH_32 Location: 4155-4359 bp Feature: domain Description: HTH_32 Location: 41 55-4359 bp Feature: domain Description: DDE_3 Location: 4581-5031 bp Feature: domain Description: DDE_3 Location: 4581 -5031 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5659 (SRSO17 transposase ), HTH_32 (pfam13565), DDE_3 (pfam13358), RVT-GII

Seq: LLXY01000088.1 Bradyrhizobium valentinum strain LmjM6 contig_178, whole genome shotgun sequence (3580 bp)
Overview 1 RT 1: 491-3454 bp Neighborhood of RT #1 [491, 3483] RVT-GII GIIM DDE_Tnp_1_4 Feature: gene Location: 491-1819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 785-1442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 785-1442 bp Feature: domain Description: GIIM Note: maturase Location: 1517-1712 bp Feature: domain Description: GIIM Note: maturase Location: 1517-1712 bp Feature: gene Location: 2086-3483 bp Feature: domain Description: DDE_Tnp_1_4 Location: 2128-3454 bp Feature: domain Description: DDE_Tnp_1_4 Location: 2 12 8-3454 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_4 (pfam13701), RVT-GII, GIIM (pfam08388)

Seq: LLXY01000028.1 Bradyrhizobium valentinum strain LmjM6 contig_123, whole genome shotgun sequence (11992 bp)
Overview 1 RT 1: 7653-11395 bp Neighborhood of RT #1 [7653, 11502] FMN_nitrolo DDE_Tnp_1_4 RVT-GII GIIM Feature: gene Location: 7653-8414 bp Feature: domain Description: FMN_nitrolo Location: 7662-8406 bp Feature: domain Description: FMN_nitrolo Location: 7662-8406 bp Feature: gene Location: 8507-9904 bp Feature: domain Description: DDE_Tnp_1_4 Location: 8552-9878 bp Feature: domain Description: DDE_Tnp_1_4 Location: 8552-9878 bp Feature: gene Location: 10174-11502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10468-11125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10468-11125 bp Feature: domain Description: GIIM Note: maturase Location: 11200-11395 bp Feature: domain Description: GIIM Note: maturase Location: 11200-113 95 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), FMN_nitrolo (TIGR03860), DDE_Tnp_1_4 (pfam13701)

Seq: LLXY01000216.1 Bradyrhizobium valentinum strain LmjM6 contig_75, whole genome shotgun sequence (34762 bp)
Overview 1 RT 1: 776-9400 bp Neighborhood of RT #1 [776, 9400] RVT-GII GIIM PinE Feature: gene Location: 776-2992 bp Feature: gene Location: 3854-6190 bp Feature: gene Location: 6855-8180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7146-7803 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 714 6-7803 bp Feature: domain Description: GIIM Note: maturase Location: 7875-8085 bp Feature: domain Description: GIIM Note: maturase Location: 7875-8085 bp Feature: gene Location: 8491-9048 bp Feature: domain Description: PinE Location: 8506-9040 bp Feature: domain Description: PinE Location: 8506-904 0 bp Feature: gene Location: 9197-9400 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LLXY01000096.1 Bradyrhizobium valentinum strain LmjM6 contig_185, whole genome shotgun sequence (3228 bp)
Overview 1 RT 1: 506-3001 bp Neighborhood of RT #1 [506, 3222] RVT-GII COG5659 Feature: gene Location: 506-1177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 914-1172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 914-1172 bp Feature: gene Location: 1795-3222 bp Feature: domain Description: COG5659 Location: 1819-3001 bp Feature: domain Description: COG5 65 9 Location: 1819-3001 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5659 (SRSO17 transposase ), RVT-GII