myRT

myRT report for GCA_001440405.1_ASM144040v1

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Seq: LLXX01000001.1 Bradyrhizobium valentinum strain LmjM3 contig_10, whole genome shotgun sequence (57370 bp)
Overview 1 RT 1: 16237-22870 bp Neighborhood of RT #1 [16237, 23007] COG3547 RVT-GII GIIM YfmG Aldo_ket_red Feature: gene Location: 16237-17265 bp Feature: domain Description: COG3547 Location: 16252-17218 bp Feature: domain Description: COG3547 Location: 1 6252-1 721 8 bp Feature: gene Location: 18394-18702 bp Feature: gene Location: 19182-20513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19473-20136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 9473-201 36 bp Feature: domain Description: GIIM Note: maturase Location: 20208-20418 bp Feature: domain Description: GIIM Note: maturase Location: 20208-2041 8 bp Feature: gene Location: 21116-21817 bp Feature: domain Description: YfmG Location: 21200-21806 bp Feature: domain Description: YfmG Location: 21 200-21 806 bp Feature: gene Location: 21889-23007 bp Feature: domain Description: Aldo_ket_red Location: 22075-22870 bp Feature: domain Description: Aldo_ket_red Location: 22075-22870 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), YfmG (COG1262), Aldo_ket_red (pfam00248)

Seq: LLXX01000207.1 Bradyrhizobium valentinum strain LmjM3 contig_7, whole genome shotgun sequence (37133 bp)
Overview 1 RT 1: 30757-36071 bp Neighborhood of RT #1 [30757, 36082] CitB RVT-GII FACL_fum10p_like PP-binding EntF Feature: gene Location: 30757-31398 bp Feature: domain Description: CitB Location: 30772-31393 bp Feature: domain Description: CitB Location: 30772 -31393 bp Feature: gene Location: 31742-31966 bp Feature: gene Location: 31953-32669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32304-32583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 304-32 583 bp Feature: gene Location: 33248-33541 bp Feature: gene Location: 33926-36082 bp Feature: domain Description: FACL_fum10p_like Location: 33959-35000 bp Feature: domain Description: FACL_fum10p_like Location: 33959-35000 bp Feature: domain Description: PP-binding Location: 35084-35264 bp Feature: domain Description: PP-binding Location: 35084-352 64 bp Feature: domain Description: EntF Location: 35384-36071 bp Feature: domain Description: EntF Location: 35384-36071 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CitB (TIGR02484), RVT-GII, FACL_fum10p_like (cd05926), PP-binding (pfam00550), EntF (COG3319)

Seq: LLXX01000194.1 Bradyrhizobium valentinum strain LmjM3 contig_634, whole genome shotgun sequence (22062 bp)
Overview 1 RT 1: 6293-11193 bp Neighborhood of RT #1 [6293, 11193] PLPDE_III_AR IlvA RVT-GII Feature: gene Location: 6293-7477 bp Feature: domain Description: PLPDE_III_AR Location: 6368-7469 bp Feature: domain Description: PLPDE_III_AR Location: 63 68-7469 bp Feature: gene Location: 7710-8690 bp Feature: domain Description: IlvA Location: 7725-8679 bp Feature: domain Description: IlvA Location: 7725-8679 bp Feature: gene Location: 8877-9572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8883-9189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8883 -9189 bp Feature: gene Location: 9685-10797 bp Feature: gene Location: 10807-11193 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PLPDE_III_AR (cd00430), IlvA (COG1171), RVT-GII

Seq: LLXX01000184.1 Bradyrhizobium valentinum strain LmjM3 contig_586, whole genome shotgun sequence (18247 bp)
Overview 1 RT 1: 1430-6238 bp Neighborhood of RT #1 [1430, 6264] RVT-GII GIIM DDE_Tnp_1_4 Feature: gene Location: 1430-1939 bp Feature: gene Location: 2458-2637 bp Feature: gene Location: 3274-4602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3568-4225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3568-4 225 bp Feature: domain Description: GIIM Note: maturase Location: 4297-4495 bp Feature: domain Description: GIIM Note: maturase Location: 4 297-4 4 95 bp Feature: gene Location: 4867-6264 bp Feature: domain Description: DDE_Tnp_1_4 Location: 4909-6238 bp Feature: domain Description: DDE_Tnp_1_4 Location: 4 909-6238 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_1_4 (pfam13701)