myRT

myRT report for GCA_001443045.1_ASM144304v1

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Seq: LKPJ01000030.1 Burkholderia ambifaria strain RZ2MS16 scaffold30, whole genome shotgun sequence (92795 bp)
Overview 1 RT 1: 68514-73957 bp Neighborhood of RT #1 [68514, 73998] MFS_MucK Histone_HNS RVT-Retrons FIN dTDP_HR_like_SDR_e Feature: gene Location: 68514-69749 bp Feature: domain Description: MFS_MucK Location: 68592-69726 bp Feature: domain Description: MFS_MucK Location: 68592-69726 bp Feature: gene Location: 70017-70346 bp Feature: domain Description: Histone_HNS Location: 70041-70275 bp Feature: domain Description: Histone_HNS Location: 70041 -70275 bp Feature: gene Location: 70713-72173 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 71289-71925 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 71 289-71 925 bp Feature: gene Location: 72296-72868 bp Feature: domain Description: FIN Location: 72476-72833 bp Feature: domain Description: FIN Location: 72476-72833 bp Feature: gene Location: 73045-73998 bp Feature: domain Description: dTDP_HR_like_SDR_e Location: 73072-73957 bp Feature: domain Description: dTDP_HR_like_SDR_e Location: 73072-73957 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_MucK (cd17371), Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), dTDP_HR_like_SDR_e (cd05254)

Seq: LKPJ01000031.1 Burkholderia ambifaria strain RZ2MS16 scaffold31, whole genome shotgun sequence (89504 bp)
Overview 1 RT 1: 9590-12608 bp Neighborhood of RT #1 [9590, 12691] RVT-GII HAD_PGPPase FA_desaturase Feature: gene Location: 9590-9802 bp Feature: gene Location: 9958-10359 bp Feature: gene Location: 9799-10983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10210-10900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102 10-10900 bp Feature: gene Location: 11638-12258 bp Feature: domain Description: HAD_PGPPase Location: 11659-12226 bp Feature: domain Description: HAD_PGPPase Location: 11659-12 2 2 6 bp Feature: gene Location: 12284-12691 bp Feature: domain Description: FA_desaturase Location: 12326-12608 bp Feature: domain Description: FA_desaturase Location: 12 32 6-12 608 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HAD_PGPPase (cd02612), FA_desaturase (pfam00487), RVT-GII

Seq: LKPJ01000032.1 Burkholderia ambifaria strain RZ2MS16 scaffold32, whole genome shotgun sequence (88364 bp)
Overview 1 RT 1: 42655-48743 bp Neighborhood of RT #1 [42655, 48754] PssA PRK05305 RVT-GII GIIM HNHc PRK05479 ilvH Feature: gene Location: 42655-43524 bp Feature: domain Description: PssA Location: 42790-43468 bp Feature: domain Description: PssA Location: 42790-43 468 bp Feature: gene Location: 43540-44184 bp Feature: domain Description: PRK05305 Location: 43564-44176 bp Feature: domain Description: PRK053 05 Location: 43 564-44176 bp Feature: gene Location: 44302-45612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44305-44893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 443 05-44893 bp Feature: domain Description: GIIM Note: maturase Location: 44944-45178 bp Feature: domain Description: GIIM Note: maturase Location: 44944-45178 bp Feature: domain Description: HNHc Note: nucleases Location: 45409-45562 bp Feature: domain Description: HNHc Note: nucleases Location: 45409-45562 bp Feature: gene Location: 47151-48167 bp Feature: domain Description: PRK05479 Location: 47154-48135 bp Feature: domain Description: PRK05479 Location: 47154-4813 5 bp Feature: gene Location: 48263-48754 bp Feature: domain Description: ilvH Location: 48266-48743 bp Feature: domain Description: ilvH Location: 48266-48743 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PssA (COG1183), PRK05305 (phosphatidylserine decarboxylase family protein), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK05479 (ketol-acid reductoisomerase; Provisional), ilvH (PRK11895)

Seq: LKPJ01000005.1 Burkholderia ambifaria strain RZ2MS16 scaffold5, whole genome shotgun sequence (342692 bp)
Overview 1 RT 1: 66271-71770 bp 2 RT 2: 202825-211986 bp Neighborhood of RT #1 [66271, 71772] GlpC IclR RVT-GII COG5394 PRK12938 Neighborhood of RT #2 [202825, 212015] yhbS PRK05297 RVT-GII GIIM HNHc PRK00711 Feature: gene Location: 66271-66993 bp Feature: domain Description: GlpC Location: 66277-66985 bp Feature: domain Description: GlpC Location: 66277-66985 bp Feature: gene Location: 67073-67984 bp Feature: domain Description: IclR Location: 67214-67937 bp Feature: domain Description: IclR Location: 67214 -67937 bp Feature: gene Location: 68103-69032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68262-68877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68262-68877 bp Feature: gene Location: 70380-71054 bp Feature: domain Description: COG5394 Location: 70491-71028 bp Feature: domain Description: COG5394 Location: 704 91-71028 bp Feature: gene Location: 71065-71772 bp Feature: domain Description: PRK12938 Location: 71068-71770 bp Feature: domain Description: PRK12938 Location: 71068-71770 bp Feature: gene Location: 202825-203367 bp Feature: domain Description: yhbS Location: 202861-203359 bp Feature: domain Description: yhbS Location: 202861-203359 bp Feature: gene Location: 203367-207431 bp Feature: domain Description: PRK05297 Location: 203382-207429 bp Feature: domain Description: PRK05297 Location: 203382-2074 29 bp Feature: gene Location: 207583-208881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 207586-208174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 207586-208174 bp Feature: domain Description: GIIM Note: maturase Location: 208228-208459 bp Feature: domain Description: GIIM Note: maturase Location: 208228-2084 59 bp Feature: domain Description: HNHc Note: nucleases Location: 208684-208843 bp Feature: domain Description: HNHc Note: nucleases Location: 208684 -20884 3 bp Feature: gene Location: 210400-210552 bp Feature: gene Location: 210711-212015 bp Feature: domain Description: PRK00711 Location: 210714-211986 bp Feature: domain Description: PRK00711 Location: 210714 -211986 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlpC (COG0247), IclR (pfam01614), RVT-GII, COG5394 (Polyhydroxyalkanoate (PHA) synthesis regulator protein, binds DNA and PHA ), PRK12938 (3-ketoacyl-ACP reductase), yhbS (COG3153), PRK05297 (phosphoribosylformylglycinamidine synthase; Provisional), GIIM (pfam08388), HNHc (smart00507), PRK00711 (D-amino acid dehydrogenase)

Seq: LKPJ01000009.1 Burkholderia ambifaria strain RZ2MS16 scaffold9, whole genome shotgun sequence (282073 bp)
Overview 1 RT 1: 273084-281322 bp Neighborhood of RT #1 [273084, 281519] rep CytC5 CytC5 RVT-GII GIIM HNHc COG4278 near_uncomplex Feature: gene Location: 273084-275171 bp Feature: domain Description: rep Location: 273099-275091 bp Feature: domain Description: rep Location: 273099-275 091 bp Feature: gene Location: 275360-276253 bp Feature: domain Description: CytC5 Location: 275516-275828 bp Feature: domain Description: CytC5 Location: 275 5 16-275 828 bp Feature: domain Description: CytC5 Location: 275897-276248 bp Feature: domain Description: CytC5 Location: 275 897-276248 bp Feature: gene Location: 276416-277714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276419-277007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276419-277007 bp Feature: domain Description: GIIM Note: maturase Location: 277061-277292 bp Feature: domain Description: GIIM Note: maturase Location: 277061-277292 bp Feature: domain Description: HNHc Note: nucleases Location: 277535-277676 bp Feature: domain Description: HNHc Note: nucleases Location: 2775 35 -277676 bp Feature: gene Location: 278852-279223 bp Feature: gene Location: 279924-281519 bp Feature: domain Description: COG4278 Location: 279993-280380 bp Feature: domain Description: COG4278 Location: 279993-280380 bp Feature: domain Description: near_uncomplex Location: 280620-281322 bp Feature: domain Description: near_uncomplex Location: 280620-281322 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rep (TIGR01074), CytC5 (COG3245), RVT-GII, GIIM (pfam08388), HNHc (smart00507), COG4278 (Uncharacterized protein ), near_uncomplex (TIGR04222)