myRT

myRT report for GCA_001443175.1_ASM144317v1

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Seq: LJOJ01000101.1 Escherichia coli strain ECGM-IMP53 scaffold_100, whole genome shotgun sequence (2663 bp)
Overview 1 RT 1: 270-2420 bp Neighborhood of RT #1 [270, 2515] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 270-479 bp Feature: gene Location: 614-2515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 881-1712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 881 -1 71 2 bp Feature: domain Description: Intron_maturas2 Location: 1826-2084 bp Feature: domain Description: Intron_maturas2 Location: 1 826-2084 bp Feature: domain Description: HNHc Note: nucleases Location: 2258-2420 bp Feature: domain Description: HNHc Note: nucleases Location: 2258-2420 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: LJOJ01000018.1 Escherichia coli strain ECGM-IMP53 scaffold_17, whole genome shotgun sequence (91278 bp)
Overview 1 RT 1: 29082-35325 bp Neighborhood of RT #1 [29082, 35462] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 29082-29348 bp Feature: domain Description: Phage_integrase Location: 29148-29244 bp Feature: domain Description: Phage_integrase Location: 2 9148-2 92 44 bp Feature: gene Location: 29431-29901 bp Feature: gene Location: 30248-33457 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 30776-31265 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 30776-312 65 bp Feature: domain Description: nitrilase Location: 32771-33368 bp Feature: domain Description: nitrilase Location: 32 771-33368 bp Feature: gene Location: 33752-34555 bp Feature: domain Description: AbiEi_3_N Location: 33785-34046 bp Feature: domain Description: AbiEi_3_N Location: 33785-34046 bp Feature: domain Description: AbiEi_3 Location: 34058-34514 bp Feature: domain Description: AbiEi_3 Location: 34058-34514 bp Feature: gene Location: 34542-35462 bp Feature: domain Description: AbiEii Location: 34584-35325 bp Feature: domain Description: AbiEii Location: 34584-3532 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)