myRT

myRT report for GCA_001443245.1_ASM144324v1

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Seq: LJOI01000005.1 Klebsiella sp. KGM-IMP216 scaffold_4, whole genome shotgun sequence (359317 bp)
Overview 1 RT 1: 32336-39189 bp 2 RT 2: 161295-165611 bp Neighborhood of RT #1 [32336, 39206] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Neighborhood of RT #2 [161295, 165802] RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 32336-33001 bp Feature: domain Description: INT_P4_C Location: 32441-32999 bp Feature: domain Description: INT_P4_C Location: 32441 -32999 bp Feature: gene Location: 33262-33702 bp Feature: domain Description: Integrase_1 Location: 33268-33484 bp Feature: domain Description: Integrase_1 Location: 33268-33484 bp Feature: gene Location: 33759-35837 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 34167-34611 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 341 67-3461 1 bp Feature: gene Location: 35837-38446 bp Feature: domain Description: FimD Location: 35894-38435 bp Feature: domain Description: FimD Location: 35894-38435 bp Feature: gene Location: 38478-39206 bp Feature: domain Description: FimC Location: 38526-39189 bp Feature: domain Description: FimC Location: 38526-391 89 bp Feature: gene Location: 161295-161438 bp Feature: gene Location: 161715-161873 bp Feature: gene Location: 162568-163500 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 162670-163267 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 62670-1 63267 bp Feature: gene Location: 163497-165152 bp Feature: domain Description: COG3950 Location: 163698-165120 bp Feature: domain Description: COG3950 Location: 1 63698-1 651 20 bp Feature: gene Location: 165155-165802 bp Feature: domain Description: TIGR02646 Location: 165224-165611 bp Feature: domain Description: TIGR02646 Location: 1 65224-1 6561 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)

Seq: LJOI01000059.1 Klebsiella sp. KGM-IMP216 scaffold_58, whole genome shotgun sequence (1914 bp)
Overview 1 RT 1: 2-1463 bp Neighborhood of RT #1 [2, 1855] RVT-GII Feature: gene Location: 2-214 bp Feature: gene Location: 368-1855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 773-1463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 773-1463 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII