myRT

myRT report for GCA_001444755.1_ASM144475v1

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Seq: LJYZ01000140.1 Pseudomonas aeruginosa strain ATCC 33353 scaffold_6, whole genome shotgun sequence (219587 bp)
Overview 1 RT 1: 181969-187799 bp Neighborhood of RT #1 [181969, 187804] SdhE RVT_N RVT-GII YkfC HNHc YgfZ HDOD Feature: gene Location: 181969-182421 bp Feature: gene Location: 182405-182659 bp Ori: KRU56298.1 Feature: domain Description: SdhE Location: 182411-182651 bp Feature: domain Description: SdhE Location: 1 8241 1 -1 82651 bp Feature: gene Location: 182749-184455 bp Ori: KRU56299.1 Feature: domain Description: RVT_N Location: 182806-183049 bp Feature: domain Description: RVT_N Location: 1 82806-1 83049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183094-183730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 83094-1 83730 bp Feature: domain Description: YkfC Location: 183928-184033 bp Feature: domain Description: YkfC Location: 1 83928-1 84033 bp Feature: domain Description: HNHc Note: nucleases Location: 184243-184399 bp Feature: domain Description: HNHc Note: nucleases Location: 1 84243-1 84399 bp Feature: gene Location: 185923-186867 bp Ori: KRU56300.1 Feature: domain Description: YgfZ Location: 185932-186832 bp Feature: domain Description: YgfZ Location: 1 85932-1 86832 bp Feature: gene Location: 186968-187804 bp Ori: KRU56301.1 Feature: domain Description: HDOD Location: 186971-187799 bp Feature: domain Description: HDOD Location: 1 86971 -1 87799 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), YgfZ (COG0354), HDOD (pfam08668)

Seq: LJYZ01000095.1 Pseudomonas aeruginosa strain ATCC 33353 scaffold_19, whole genome shotgun sequence (105740 bp)
Overview 1 RT 1: 101548-105082 bp Neighborhood of RT #1 [101548, 105111] HTH_XRE RVT_N RVT-GII GIIM HNH Feature: gene Location: 101548-101790 bp Feature: gene Location: 101884-102120 bp Ori: KRU65060.1 Feature: domain Description: HTH_XRE Location: 101902-102019 bp Feature: domain Description: HTH_XRE Location: 101902 -102 019 bp Feature: gene Location: 103426-105111 bp Ori: KRU65061.1 Feature: domain Description: RVT_N Location: 103483-103723 bp Feature: domain Description: RVT_N Location: 103483-10372 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103771-104407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103771-104407 bp Feature: domain Description: GIIM Note: maturase Location: 104461-104692 bp Feature: domain Description: GIIM Note: maturase Location: 104461-104692 bp Feature: domain Description: HNH Note: nucleases Location: 104944-105082 bp Feature: domain Description: HNH Note: nucleases Location: 104944-105082 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: LJYZ01000113.1 Pseudomonas aeruginosa strain ATCC 33353 scaffold_35, whole genome shotgun sequence (66108 bp)
Overview 1 RT 1: 34549-43407 bp Neighborhood of RT #1 [34549, 43415] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Feature: gene Location: 34549-35223 bp Ori: KRU60722.1 Feature: domain Description: NTP_transferase_like_1 Location: 34555-35194 bp Feature: domain Description: NTP_transferase_like_1 Location: 3 4555-3 5194 bp Feature: gene Location: 35220-36236 bp Ori: KRU60723.1 Feature: domain Description: COG3178 Location: 35223-36222 bp Feature: domain Description: COG3 178 Location: 3 5223 -3 6222 bp Feature: gene Location: 37508-39220 bp Ori: KRU60724.1 Feature: domain Description: RVT_N Location: 37565-37808 bp Feature: domain Description: RVT_N Location: 3 7565-3 7808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37853-38489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 7853 -3 8489 bp Feature: domain Description: YkfC Location: 38699-38849 bp Feature: domain Description: YkfC Location: 3 8699-3 8849 bp Feature: domain Description: HNH Note: nucleases Location: 39026-39164 bp Feature: domain Description: HNH Note: nucleases Location: 3 9026-3 9164 bp Feature: gene Location: 39353-42142 bp Ori: KRU60725.1 Feature: domain Description: LptD Location: 39548-42128 bp Feature: domain Description: LptD Location: 3 9548-42128 bp Feature: gene Location: 42123-43415 bp Ori: KRU60726.1 Feature: domain Description: PRK10770 Location: 42213-43407 bp Feature: domain Description: PRK10770 Location: 42213 -43 407 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional)

Seq: LJYZ01000115.1 Pseudomonas aeruginosa strain ATCC 33353 scaffold_37, whole genome shotgun sequence (64685 bp)
Overview 1 RT 1: 27359-32226 bp Neighborhood of RT #1 [27359, 32226] HipB RVT-UG17 Feature: gene Location: 27359-27640 bp Ori: KRU60336.1 Feature: domain Description: HipB Location: 27380-27614 bp Feature: domain Description: HipB Location: 27380-27614 bp Feature: gene Location: 27726-28151 bp Feature: gene Location: 28680-30044 bp Ori: KRU60338.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 28908-29511 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 28908-29511 bp Feature: gene Location: 30944-31264 bp Feature: gene Location: 31909-32226 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipB (COG1396), RVT-UG17

Seq: LJYZ01000126.1 Pseudomonas aeruginosa strain ATCC 33353 scaffold_47, whole genome shotgun sequence (38011 bp)
Overview 1 RT 1: 31340-37799 bp Neighborhood of RT #1 [31340, 37799] COG4271 CHD CHD RVT-GII GIIM Feature: gene Location: 31340-32251 bp Ori: KRU58242.1 Feature: domain Description: COG4271 Location: 31565-32234 bp Feature: domain Description: COG4271 Location: 315 65 -32234 bp Feature: gene Location: 32332-33876 bp Ori: KRU58238.1 Feature: domain Description: CHD Location: 32548-32962 bp Feature: domain Description: CHD Location: 325 48-32962 bp Feature: domain Description: CHD Location: 33190-33679 bp Feature: domain Description: CHD Location: 33190-33679 bp Feature: gene Location: 35871-37139 bp Ori: KRU58239.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36084-36741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36084-36741 bp Feature: domain Description: GIIM Note: maturase Location: 36819-37041 bp Feature: domain Description: GIIM Note: maturase Location: 36819-37041 bp Feature: gene Location: 37632-37799 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4271 (Predicted nucleotide-binding protein containing TIR -like domain ), CHD (cd07302), RVT-GII, GIIM (pfam08388)