myRT

myRT report for GCA_001444835.1_ASM144483v1

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Seq: LJZD01000143.1 Pseudomonas aeruginosa strain ATCC 33357 scaffold_4, whole genome shotgun sequence (138216 bp)
Overview 1 RT 1: 83604-94274 bp Neighborhood of RT #1 [83604, 94339] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 NERD Feature: gene Location: 83604-85457 bp Feature: domain Description: PRK05658 Location: 83616-85455 bp Feature: domain Description: PRK05658 Location: 8361 6-85455 bp Feature: gene Location: 85564-89301 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 85672-86329 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 85672-86329 bp Feature: domain Description: PRK09776 Location: 86542-87013 bp Feature: domain Description: PRK09776 Location: 86542-8701 3 bp Feature: domain Description: PAS Location: 87058-87595 bp Feature: domain Description: PAS Location: 87058-87595 bp Feature: domain Description: PRK10060 Location: 87604-89251 bp Feature: domain Description: PRK1 0060 Location: 87604-89251 bp Feature: gene Location: 90382-92067 bp Feature: RT Description: RVT_N Location: 90439-90679 bp Feature: RT Description: RVT_N Location: 90439-90679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90727-91363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90727-91 363 bp Feature: domain Description: GIIM Note: maturase Location: 91417-91648 bp Feature: domain Description: GIIM Note: maturase Location: 91 41 7-91 648 bp Feature: domain Description: HNH Note: nucleases Location: 91900-92038 bp Feature: domain Description: HNH Note: nucleases Location: 91 900-92038 bp Feature: gene Location: 92790-93911 bp Feature: domain Description: COG3177 Location: 92808-93900 bp Feature: domain Description: COG31 77 Location: 92808-93900 bp Feature: gene Location: 94004-94339 bp Feature: domain Description: NERD Location: 94103-94274 bp Feature: domain Description: NERD Location: 941 03-94274 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3177 (Fic family protein )
NERD (pfam08378)