myRT

myRT report for GCA_001444955.1_ASM144495v1

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Seq: LJZE01000001.1 Pseudomonas aeruginosa strain ATCC 33358 scaffold_0, whole genome shotgun sequence (322214 bp)
Overview 1 RT 1: 49440-58311 bp 2 RT 2: 74575-84872 bp Neighborhood of RT #1 [49440, 58319] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74575, 84883] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 49440-50114 bp Ori: KRU96590.1 Feature: domain Description: NTP_transferase_like_1 Location: 49446-50085 bp Feature: domain Description: NTP_transferase_like_1 Location: 49446-50085 bp Feature: gene Location: 50111-51127 bp Ori: KRU96591.1 Feature: domain Description: COG3178 Location: 50114-51113 bp Feature: domain Description: COG31 78 Location: 501 1 4-51 1 1 3 bp Feature: gene Location: 52400-54112 bp Ori: KRU96592.1 Feature: domain Description: RVT_N Location: 52457-52700 bp Feature: domain Description: RVT_N Location: 52457-52700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52745-53381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52745-53381 bp Feature: domain Description: YkfC Location: 53588-53741 bp Feature: domain Description: YkfC Location: 53588-53741 bp Feature: domain Description: HNH Note: nucleases Location: 53918-54056 bp Feature: domain Description: HNH Note: nucleases Location: 5391 8-54056 bp Feature: gene Location: 54245-57046 bp Ori: KRU96593.1 Feature: domain Description: LptD Location: 54440-57032 bp Feature: domain Description: LptD Location: 54440-57032 bp Feature: gene Location: 57027-58319 bp Ori: KRU96594.1 Feature: domain Description: PRK10770 Location: 57117-58311 bp Feature: domain Description: PRK1 0770 Location: 571 1 7-5831 1 bp Feature: gene Location: 74575-76428 bp Ori: KRU96612.1 Feature: domain Description: PRK05658 Location: 74587-76426 bp Feature: domain Description: PRK05658 Location: 74587-76426 bp Feature: gene Location: 76535-80272 bp Ori: KRU96613.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 76643-77300 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76643-77300 bp Feature: domain Description: PRK09776 Location: 77513-77984 bp Feature: domain Description: PRK09776 Location: 7751 3-77984 bp Feature: domain Description: PAS Location: 78041-78566 bp Feature: domain Description: PAS Location: 78041 -78566 bp Feature: domain Description: PRK10060 Location: 78575-80222 bp Feature: domain Description: PRK1 0060 Location: 78575-80222 bp Feature: gene Location: 81353-83038 bp Ori: KRU96614.1 Feature: domain Description: RVT_N Location: 81410-81650 bp Feature: domain Description: RVT_N Location: 81 41 0-81 650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81698-82334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 698-82334 bp Feature: domain Description: GIIM Note: maturase Location: 82388-82619 bp Feature: domain Description: GIIM Note: maturase Location: 82388-8261 9 bp Feature: domain Description: HNH Note: nucleases Location: 82871-83009 bp Feature: domain Description: HNH Note: nucleases Location: 82871 -83009 bp Feature: gene Location: 83366-83503 bp Feature: gene Location: 83762-84883 bp Ori: KRU96616.1 Feature: domain Description: COG3177 Location: 83780-84872 bp Feature: domain Description: COG31 77 Location: 83780-84872 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )

Seq: LJZE01000220.1 Pseudomonas aeruginosa strain ATCC 33358 scaffold_69, whole genome shotgun sequence (25313 bp)
Overview 1 RT 1: 5612-12502 bp Neighborhood of RT #1 [5612, 12516] PBP2_HisK RVT-UG15 DEAH_box_HrpB IV_pilus_PilQ Feature: gene Location: 5612-6346 bp Ori: KRU82876.1 Feature: domain Description: PBP2_HisK Location: 5714-6326 bp Feature: domain Description: PBP2 _HisK Location: 5714-632 6 bp Feature: gene Location: 6370-6777 bp Feature: gene Location: 7653-8954 bp Ori: KRU82878.1 Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 7758-8172 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 7758-8172 bp Feature: gene Location: 9065-11587 bp Ori: KRU82879.1 Feature: domain Description: DEAH_box_HrpB Location: 9077-11582 bp Feature: domain Description: DEAH_box_HrpB Location: 9077-11582 bp Feature: gene Location: 11902-12516 bp Ori: KRU82880.1 Feature: domain Description: IV_pilus_PilQ Location: 12292-12502 bp Feature: domain Description: IV_pilus_PilQ Location: 12 2 92 -12 502 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP2_HisK (cd13704), RVT-UG15, DEAH_box_HrpB (TIGR01970), IV_pilus_PilQ (TIGR02515)