myRT

myRT report for GCA_001445005.1_ASM144500v1

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Seq: LJZM01000003.1 Pseudomonas aeruginosa strain ATCC 43731 scaffold_10, whole genome shotgun sequence (116698 bp)
Overview 1 RT 1: 62108-72778 bp Neighborhood of RT #1 [62108, 72843] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 NERD Feature: gene Location: 62108-63961 bp Feature: domain Description: PRK05658 Location: 62120-63959 bp Feature: domain Description: PRK05658 Location: 621 20-63959 bp Feature: gene Location: 64068-67805 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 64176-64833 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 641 76-64833 bp Feature: domain Description: PRK09776 Location: 65046-65517 bp Feature: domain Description: PRK09776 Location: 65046-6551 7 bp Feature: domain Description: PAS Location: 65562-66099 bp Feature: domain Description: PAS Location: 65562-66099 bp Feature: domain Description: PRK10060 Location: 66108-67755 bp Feature: domain Description: PRK1 0060 Location: 661 08-67755 bp Feature: gene Location: 68886-70571 bp Feature: RT Description: RVT_N Location: 68943-69183 bp Feature: RT Description: RVT_N Location: 68943-691 83 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69231-69867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69231 -69867 bp Feature: domain Description: GIIM Note: maturase Location: 69921-70152 bp Feature: domain Description: GIIM Note: maturase Location: 69921 -701 52 bp Feature: domain Description: HNH Note: nucleases Location: 70404-70542 bp Feature: domain Description: HNH Note: nucleases Location: 70404-70542 bp Feature: gene Location: 71294-72415 bp Feature: domain Description: COG3177 Location: 71312-72404 bp Feature: domain Description: COG31 77 Location: 71 31 2-72404 bp Feature: gene Location: 72508-72843 bp Feature: domain Description: NERD Location: 72607-72778 bp Feature: domain Description: NERD Location: 72607-72778 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3177 (Fic family protein )
NERD (pfam08378)