myRT

myRT report for GCA_001445035.1_ASM144503v1

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Seq: LJZN01000121.1 Pseudomonas aeruginosa strain ATCC 43732 scaffold_21, whole genome shotgun sequence (97540 bp)
Overview 1 RT 1: 61425-70269 bp 2 RT 2: 86533-96833 bp Neighborhood of RT #1 [61425, 70277] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [86533, 96844] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 61425-62099 bp Feature: domain Description: NTP_transferase_like_1 Location: 61431-62070 bp Feature: domain Description: NTP_transferase_like_1 Location: 61 431 -62070 bp Feature: gene Location: 62096-63112 bp Feature: domain Description: COG3178 Location: 62099-63098 bp Feature: domain Description: COG31 78 Location: 62099-63098 bp Feature: gene Location: 64385-66097 bp Feature: RT Description: RVT_N Location: 64442-64685 bp Feature: RT Description: RVT_N Location: 64442-64685 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64730-65366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64730-65366 bp Feature: domain Description: YkfC Location: 65573-65726 bp Feature: domain Description: YkfC Location: 65573-65726 bp Feature: domain Description: HNH Note: nucleases Location: 65903-66041 bp Feature: domain Description: HNH Note: nucleases Location: 65903-66041 bp Feature: gene Location: 66230-69004 bp Feature: domain Description: LptD Location: 66425-68990 bp Feature: domain Description: LptD Location: 66425-68990 bp Feature: gene Location: 68985-70277 bp Feature: domain Description: PRK10770 Location: 69075-70269 bp Feature: domain Description: PRK1 0770 Location: 69075-70269 bp Feature: gene Location: 86533-88386 bp Feature: domain Description: PRK05658 Location: 86545-88384 bp Feature: domain Description: PRK05658 Location: 86545-88384 bp Feature: gene Location: 88493-92230 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 88601-89258 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 88601 -89258 bp Feature: domain Description: PRK09776 Location: 89471-89942 bp Feature: domain Description: PRK09776 Location: 89471 -89942 bp Feature: domain Description: PAS Location: 89987-90524 bp Feature: domain Description: PAS Location: 89987-90524 bp Feature: domain Description: PRK10060 Location: 90533-92180 bp Feature: domain Description: PRK1 0060 Location: 90533-921 80 bp Feature: gene Location: 93311-94996 bp Feature: RT Description: RVT_N Location: 93368-93608 bp Feature: RT Description: RVT_N Location: 93368-93608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93656-94292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93656-94292 bp Feature: domain Description: GIIM Note: maturase Location: 94346-94577 bp Feature: domain Description: GIIM Note: maturase Location: 94346-94577 bp Feature: domain Description: HNH Note: nucleases Location: 94829-94967 bp Feature: domain Description: HNH Note: nucleases Location: 94829-94967 bp Feature: gene Location: 95324-95461 bp Feature: gene Location: 95723-96844 bp Feature: domain Description: COG3177 Location: 95741-96833 bp Feature: domain Description: COG31 77 Location: 95741 -96833 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )