myRT

myRT report for GCA_001445815.1_ASM144581v1

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Seq: LNCE01000139.1 Janthinobacterium sp. Ant5-2-1 strain Ant5-2-1 (purple) Contig139, whole genome shotgun sequence (3424 bp)
Overview 1 RT 1: 1-2344 bp Neighborhood of RT #1 [1, 3246] RVT-UNC Feature: gene Location: 1-195 bp Feature: gene Location: 546-1502 bp Feature: gene Location: 1495-3246 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1954-2344 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1 954-2344 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11/RVT-UG7/RVT-UG3/RVT-UG17(RVT-UNC)

Seq: LNCE01000050.1 Janthinobacterium sp. Ant5-2-1 strain Ant5-2-1 (purple) Contig50, whole genome shotgun sequence (6443 bp)
Overview 1 RT 1: 3-2037 bp Neighborhood of RT #1 [3, 2048] RVT-UG9 AlpA Feature: gene Location: 3-1322 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 240-876 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 2 40-876 bp Feature: gene Location: 1337-1690 bp Feature: gene Location: 1848-2048 bp Feature: domain Description: AlpA Location: 1851-2037 bp Feature: domain Description: AlpA Location: 1851-2 037 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG9, AlpA (COG3311)

Seq: LNCE01000006.1 Janthinobacterium sp. Ant5-2-1 strain Ant5-2-1 (purple) Contig6, whole genome shotgun sequence (91778 bp)
Overview 1 RT 1: 51585-60104 bp Neighborhood of RT #1 [51585, 60142] PRK10770 LptD RVT_N RVT-GII GIIM HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 51585-53012 bp Feature: domain Description: PRK10770 Location: 51780-52995 bp Feature: domain Description: PRK10770 Location: 51780-52995 bp Feature: gene Location: 53083-55320 bp Feature: domain Description: LptD Location: 53140-55234 bp Feature: domain Description: LptD Location: 53 140-5523 4 bp Feature: gene Location: 56465-58168 bp Feature: domain Description: RVT_N Location: 56525-56768 bp Feature: domain Description: RVT_N Location: 56525-56768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56813-57461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56813 -57461 bp Feature: domain Description: GIIM Note: maturase Location: 57512-57746 bp Feature: domain Description: GIIM Note: maturase Location: 57512-57746 bp Feature: domain Description: HNH Note: nucleases Location: 57998-58133 bp Feature: domain Description: HNH Note: nucleases Location: 57998-5813 3 bp Feature: gene Location: 58293-59360 bp Feature: domain Description: COG3178 Location: 58329-59334 bp Feature: domain Description: COG3 178 Location: 583 29-593 3 4 bp Feature: gene Location: 59423-60142 bp Feature: domain Description: NTP_transferase_like_1 Location: 59429-60104 bp Feature: domain Description: NTP_transferase_like_1 Location: 59429-60104 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)