myRT

myRT report for GCA_001449165.1_WH-SGI-V-07057

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Seq: LLLB01000009.1 Pseudomonas aeruginosa strain WH-SGI-V-07057 WH-SGI-V-07057_contig17, whole genome shotgun sequence (165377 bp)
Overview 1 RT 1: 20610-30906 bp Neighborhood of RT #1 [20610, 30917] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 20610-22463 bp Ori: KSC06242.1 Feature: domain Description: PRK05658 Location: 20622-22461 bp Feature: domain Description: PRK05658 Location: 20622-22461 bp Feature: gene Location: 22570-26307 bp Ori: KSC06243.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 22678-23335 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 22678-23335 bp Feature: domain Description: PRK09776 Location: 23548-24019 bp Feature: domain Description: PRK09776 Location: 23548-2401 9 bp Feature: domain Description: PAS Location: 24076-24601 bp Feature: domain Description: PAS Location: 24076-24601 bp Feature: domain Description: PRK10060 Location: 24613-26257 bp Feature: domain Description: PRK1 0060 Location: 2461 3-26257 bp Feature: gene Location: 27388-29073 bp Ori: KSC06244.1 Feature: domain Description: RVT_N Location: 27445-27685 bp Feature: domain Description: RVT_N Location: 27445-27685 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27733-28369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27733-28369 bp Feature: domain Description: GIIM Note: maturase Location: 28423-28654 bp Feature: domain Description: GIIM Note: maturase Location: 28423-28654 bp Feature: domain Description: HNH Note: nucleases Location: 28906-29044 bp Feature: domain Description: HNH Note: nucleases Location: 28906-29044 bp Feature: gene Location: 29401-29537 bp Feature: gene Location: 29796-30917 bp Ori: KSC06245.1 Feature: domain Description: COG3177 Location: 29814-30906 bp Feature: domain Description: COG31 77 Location: 2981 4-30906 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3177 (Fic family protein )

Seq: LLLB01000046.1 Pseudomonas aeruginosa strain WH-SGI-V-07057 WH-SGI-V-07057_contig50, whole genome shotgun sequence (2992 bp)
Overview 1 RT 1: 67-2179 bp Neighborhood of RT #1 [67, 2179] RVT_N RVT-GII YkfC HNH Feature: gene Location: 67-1779 bp Ori: KSB96059.1 Feature: domain Description: RVT_N Location: 124-367 bp Feature: domain Description: RVT_N Location: 12 4-367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 412-1048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 412 -1048 bp Feature: domain Description: YkfC Location: 1255-1408 bp Feature: domain Description: YkfC Location: 12 55-1408 bp Feature: domain Description: HNH Note: nucleases Location: 1585-1723 bp Feature: domain Description: HNH Note: nucleases Location: 1585-172 3 bp Feature: gene Location: 1967-2179 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844)

Seq: LLLB01000078.1 Pseudomonas aeruginosa strain WH-SGI-V-07057 WH-SGI-V-07057_contig8, whole genome shotgun sequence (258901 bp)
Overview 1 RT 1: 252940-256997 bp Neighborhood of RT #1 [252940, 257164] Creatinase_N Creatinase IS5 RVT-GII GIIM DUF772 Feature: gene Location: 252940-254151 bp Ori: KSB93165.1 Feature: domain Description: Creatinase_N Location: 253021-253414 bp Feature: domain Description: Creatinase_N Location: 253 021-253 414 bp Feature: domain Description: Creatinase Location: 253435-254113 bp Feature: domain Description: Creatinase Location: 253 43 5-254113 bp Feature: gene Location: 254334-254804 bp Feature: domain Description: IS5 Location: 254340-254775 bp Feature: domain Description: IS5 Location: 2543 40-254775 bp Feature: gene Location: 254864-256132 bp Ori: KSB93166.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 255077-255734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 255077-25573 4 bp Feature: domain Description: GIIM Note: maturase Location: 255812-256034 bp Feature: domain Description: GIIM Note: maturase Location: 255812-25603 4 bp Feature: gene Location: 256521-256616 bp Feature: gene Location: 256652-257164 bp Feature: domain Description: DUF772 Location: 256802-256997 bp Feature: domain Description: DUF772 Location: 256802-256997 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Creatinase_N (pfam01321), Creatinase (cd01090), IS5 (COG3039), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598)

Seq: LLLB01000021.1 Pseudomonas aeruginosa strain WH-SGI-V-07057 WH-SGI-V-07057_contig28, whole genome shotgun sequence (66564 bp)
Overview 1 RT 1: 62411-66564 bp Neighborhood of RT #1 [62411, 66564] COG4127 AlpA RVT-UG5 nitrilase Feature: gene Location: 62411-63403 bp Ori: KSC01406.1 Feature: domain Description: COG4127 Location: 62417-63392 bp Feature: domain Description: COG4 127 Location: 624 17-63392 bp Feature: gene Location: 63408-63620 bp Ori: OPD67853.1 Feature: domain Description: AlpA Location: 63411-63582 bp Feature: domain Description: AlpA Location: 634 11-63582 bp Feature: gene Location: 63773-66262 bp Ori: KSC01407.2 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 63779-64214 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 63779-64 214 bp Feature: domain Description: nitrilase Location: 65576-66158 bp Feature: domain Description: nitrilase Location: 65576-66158 bp Feature: gene Location: 66347-66564 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), AlpA (COG3311), RVT-UG5, nitrilase (cl11424)