myRT

myRT report for GCA_001449345.1_WH-SGI-V-07062

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Seq: LLLM01000045.1 Pseudomonas aeruginosa strain WH-SGI-V-07062 WH-SGI-V-07062_contig5, whole genome shotgun sequence (288665 bp)
Overview 1 RT 1: 80338-87222 bp Neighborhood of RT #1 [80338, 87242] IV_pilus_PilQ DEAH_box_HrpB RVT-UG15 PBP2_HisK Feature: gene Location: 80338-80952 bp Ori: KSC59202.1 Feature: domain Description: IV_pilus_PilQ Location: 80728-80938 bp Feature: domain Description: IV_pilus_PilQ Location: 80728-80938 bp Feature: gene Location: 81267-83789 bp Ori: KSC59203.1 Feature: domain Description: DEAH_box_HrpB Location: 81279-83784 bp Feature: domain Description: DEAH_box_HrpB Location: 81 279-83784 bp Feature: gene Location: 83900-85201 bp Ori: KSC59204.1 Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 84005-84419 bp Feature: RT Description: RVT-UG1 5 Note: UG1 5 RT Location: 84005-8441 9 bp Feature: gene Location: 86077-86484 bp Feature: gene Location: 86508-87242 bp Ori: KSC59206.1 Feature: domain Description: PBP2_HisK Location: 86610-87222 bp Feature: domain Description: PBP2_HisK Location: 8661 0-87222 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IV_pilus_PilQ (TIGR02515), DEAH_box_HrpB (TIGR01970), RVT-UG15, PBP2_HisK (cd13704)

Seq: LLLM01000034.1 Pseudomonas aeruginosa strain WH-SGI-V-07062 WH-SGI-V-07062_contig4, whole genome shotgun sequence (419918 bp)
Overview 1 RT 1: 329827-340133 bp 2 RT 2: 356391-364439 bp Neighborhood of RT #1 [329827, 340135] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [356391, 364453] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 329827-330948 bp Ori: KSC62758.1 Feature: domain Description: COG3177 Location: 329845-330937 bp Feature: domain Description: COG3177 Location: 32 9845-330937 bp Feature: gene Location: 331207-331344 bp Feature: gene Location: 331672-333357 bp Ori: KSC62760.1 Feature: domain Description: RVT_N Location: 331729-331969 bp Feature: domain Description: RVT_N Location: 33172 9-331969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 332017-332653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 332 017-332 653 bp Feature: domain Description: GIIM Note: maturase Location: 332707-332938 bp Feature: domain Description: GIIM Note: maturase Location: 332 707-332 938 bp Feature: domain Description: HNH Note: nucleases Location: 333190-333328 bp Feature: domain Description: HNH Note: nucleases Location: 333190-33332 8 bp Feature: gene Location: 334438-338175 bp Ori: KSC62761.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 334546-335203 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 334546-3352 03 bp Feature: domain Description: PRK09776 Location: 335416-335887 bp Feature: domain Description: PRK09776 Location: 335416-335887 bp Feature: domain Description: PAS Location: 335944-336469 bp Feature: domain Description: PAS Location: 335944-336469 bp Feature: domain Description: PRK10060 Location: 336478-338125 bp Feature: domain Description: PRK10060 Location: 336478-33812 5 bp Feature: gene Location: 338282-340135 bp Ori: KSC62762.1 Feature: domain Description: PRK05658 Location: 338294-340133 bp Feature: domain Description: PRK05658 Location: 3382 94-340133 bp Feature: gene Location: 356391-357683 bp Ori: KSC62780.1 Feature: domain Description: PRK10770 Location: 356481-357675 bp Feature: domain Description: PRK10770 Location: 356481-357675 bp Feature: gene Location: 357664-360465 bp Ori: KSC62781.1 Feature: domain Description: LptD Location: 357859-360451 bp Feature: domain Description: LptD Location: 357859-360451 bp Feature: gene Location: 360598-362310 bp Ori: KSC62782.1 Feature: domain Description: RVT_N Location: 360655-360898 bp Feature: domain Description: RVT_N Location: 360655-360898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 360943-361579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 360943-361579 bp Feature: domain Description: YkfC Location: 361786-361939 bp Feature: domain Description: YkfC Location: 361786-361939 bp Feature: domain Description: HNH Note: nucleases Location: 362116-362254 bp Feature: domain Description: HNH Note: nucleases Location: 362 116-362 2 54 bp Feature: gene Location: 362498-362710 bp Feature: gene Location: 363437-364453 bp Ori: KSC62783.1 Feature: domain Description: COG3178 Location: 363440-364439 bp Feature: domain Description: COG3178 Location: 363440-364439 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )