myRT

myRT report for GCA_001449365.1_WH-SGI-V-07051

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Seq: LLLO01000028.1 Pseudomonas aeruginosa strain WH-SGI-V-07051 WH-SGI-V-07051_contig2, whole genome shotgun sequence (610741 bp)
Overview 1 RT 1: 523511-530401 bp Neighborhood of RT #1 [523511, 530415] PBP2_HisK RVT-UG15 DEAH_box_HrpB IV_pilus_PilQ Feature: gene Location: 523511-524245 bp Ori: KSD03389.1 Feature: domain Description: PBP2_HisK Location: 523613-524225 bp Feature: domain Description: PBP2_HisK Location: 52361 3-524225 bp Feature: gene Location: 524269-524676 bp Feature: gene Location: 525552-526853 bp Ori: KSD03391.1 Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 525657-526071 bp Feature: RT Description: RVT-UG1 5 Note: UG1 5 RT Location: 525657-526071 bp Feature: gene Location: 526964-529486 bp Ori: KSD03392.1 Feature: domain Description: DEAH_box_HrpB Location: 526976-529481 bp Feature: domain Description: DEAH_box_HrpB Location: 526976-529481 bp Feature: gene Location: 529801-530415 bp Ori: KSD03393.1 Feature: domain Description: IV_pilus_PilQ Location: 530191-530401 bp Feature: domain Description: IV_pilus_PilQ Location: 5301 91 -530401 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP2_HisK (cd13704), RVT-UG15, DEAH_box_HrpB (TIGR01970), IV_pilus_PilQ (TIGR02515)

Seq: LLLO01000026.1 Pseudomonas aeruginosa strain WH-SGI-V-07051 WH-SGI-V-07051_contig18, whole genome shotgun sequence (143011 bp)
Overview 1 RT 1: 50592-58792 bp 2 RT 2: 75056-85180 bp Neighborhood of RT #1 [50592, 58800] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [75056, 85188] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH AmpC Arabinose_bd AraC Feature: gene Location: 50592-51608 bp Ori: KSD03915.1 Feature: domain Description: COG3178 Location: 50595-51594 bp Feature: domain Description: COG3178 Location: 50595-51594 bp Feature: gene Location: 52481-52693 bp Feature: gene Location: 52881-54593 bp Ori: KSD03916.1 Feature: domain Description: RVT_N Location: 52938-53181 bp Feature: domain Description: RVT_N Location: 52 938-53181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53226-53862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 532 2 6-53862 bp Feature: domain Description: YkfC Location: 54069-54222 bp Feature: domain Description: YkfC Location: 54069-542 2 2 bp Feature: domain Description: HNH Note: nucleases Location: 54399-54537 bp Feature: domain Description: HNH Note: nucleases Location: 54399-54537 bp Feature: gene Location: 54726-57527 bp Ori: KSD03917.1 Feature: domain Description: LptD Location: 54921-57513 bp Feature: domain Description: LptD Location: 5492 1-57513 bp Feature: gene Location: 57508-58800 bp Ori: KSD03918.1 Feature: domain Description: PRK10770 Location: 57598-58792 bp Feature: domain Description: PRK10770 Location: 57598-58792 bp Feature: gene Location: 75056-76909 bp Ori: KSD03936.1 Feature: domain Description: PRK05658 Location: 75068-76907 bp Feature: domain Description: PRK05658 Location: 75068-76907 bp Feature: gene Location: 77016-80753 bp Ori: KSD03937.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 77124-77781 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 7712 4-77781 bp Feature: domain Description: PRK09776 Location: 77994-78465 bp Feature: domain Description: PRK09776 Location: 77994-78465 bp Feature: domain Description: PAS Location: 78525-79047 bp Feature: domain Description: PAS Location: 7852 5-79047 bp Feature: domain Description: PRK10060 Location: 79059-80703 bp Feature: domain Description: PRK10060 Location: 79059-80703 bp Feature: gene Location: 81670-83355 bp Ori: KSD03938.1 Feature: domain Description: RVT_N Location: 81727-81967 bp Feature: domain Description: RVT_N Location: 8172 7-81967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82015-82651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82 015-82 651 bp Feature: domain Description: GIIM Note: maturase Location: 82705-82936 bp Feature: domain Description: GIIM Note: maturase Location: 82 705-82 936 bp Feature: domain Description: HNH Note: nucleases Location: 83188-83326 bp Feature: domain Description: HNH Note: nucleases Location: 83188-8332 6 bp Feature: gene Location: 83447-84202 bp Feature: domain Description: AmpC Location: 83453-84188 bp Feature: domain Description: AmpC Location: 83453-84188 bp Feature: gene Location: 84211-85188 bp Ori: KSD03939.1 Feature: domain Description: Arabinose_bd Location: 84370-84790 bp Feature: domain Description: Arabinose_bd Location: 84370-84790 bp Feature: domain Description: AraC Location: 84883-85180 bp Feature: domain Description: AraC Location: 84883-85180 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), AmpC (COG1680), Arabinose_bd (pfam12625), AraC (COG2207)