myRT

myRT report for GCA_001449385.1_WH-SGI-V-07072

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Seq: LLLP01000023.1 Pseudomonas aeruginosa strain WH-SGI-V-07072 WH-SGI-V-07072_contig3, whole genome shotgun sequence (637578 bp)
Overview 1 RT 1: 83151-93438 bp Neighborhood of RT #1 [83151, 93449] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 83151-85004 bp Feature: domain Description: PRK05658 Location: 83163-85002 bp Feature: domain Description: PRK05658 Location: 831 63-85002 bp Feature: gene Location: 85111-88848 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 85219-85876 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 8521 9-85876 bp Feature: domain Description: PRK09776 Location: 86089-86563 bp Feature: domain Description: PRK09776 Location: 86089-86563 bp Feature: domain Description: PAS Location: 86614-87148 bp Feature: domain Description: PAS Location: 8661 4-871 48 bp Feature: domain Description: PRK10060 Location: 87151-88798 bp Feature: domain Description: PRK1 0060 Location: 871 51 -88798 bp Feature: gene Location: 89929-91614 bp Feature: RT Description: RVT_N Location: 89986-90226 bp Feature: RT Description: RVT_N Location: 89986-90226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90274-90910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90274-9091 0 bp Feature: domain Description: GIIM Note: maturase Location: 90964-91195 bp Feature: domain Description: GIIM Note: maturase Location: 90964-91 1 95 bp Feature: domain Description: HNH Note: nucleases Location: 91447-91585 bp Feature: domain Description: HNH Note: nucleases Location: 91 447-91 585 bp Feature: gene Location: 91917-92066 bp Feature: gene Location: 92328-93449 bp Feature: domain Description: COG3177 Location: 92346-93438 bp Feature: domain Description: COG31 77 Location: 92346-93438 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3177 (Fic family protein )