myRT

myRT report for GCA_001449395.1_WH-SGI-V-07066

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Seq: LLLQ01000056.1 Pseudomonas aeruginosa strain WH-SGI-V-07066 WH-SGI-V-07066_contig6, whole genome shotgun sequence (376079 bp)
Overview 1 RT 1: 292069-301213 bp 2 RT 2: 317471-325652 bp Neighborhood of RT #1 [292069, 301215] RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [317471, 325666] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 292069-292146 bp Feature: gene Location: 292132-292448 bp Feature: gene Location: 292752-294437 bp Ori: KSC95977.1 Feature: domain Description: RVT_N Location: 292809-293049 bp Feature: domain Description: RVT_N Location: 292809-293049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 293097-293733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 293097-293733 bp Feature: domain Description: GIIM Note: maturase Location: 293787-294018 bp Feature: domain Description: GIIM Note: maturase Location: 293787-29401 8 bp Feature: domain Description: HNH Note: nucleases Location: 294270-294408 bp Feature: domain Description: HNH Note: nucleases Location: 294270-294408 bp Feature: gene Location: 295518-299255 bp Ori: KSC95978.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 295626-296283 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 295626-296283 bp Feature: domain Description: PRK09776 Location: 296496-296967 bp Feature: domain Description: PRK09776 Location: 296496-296967 bp Feature: domain Description: PAS Location: 297039-297549 bp Feature: domain Description: PAS Location: 297039-297549 bp Feature: domain Description: PRK10060 Location: 297558-299205 bp Feature: domain Description: PRK1 0060 Location: 297558-299205 bp Feature: gene Location: 299362-301215 bp Ori: KSC95979.1 Feature: domain Description: PRK05658 Location: 299374-301213 bp Feature: domain Description: PRK05658 Location: 299374-301 21 3 bp Feature: gene Location: 317471-318763 bp Ori: KSC95997.1 Feature: domain Description: PRK10770 Location: 317561-318755 bp Feature: domain Description: PRK1 0770 Location: 31 7561 -31 8755 bp Feature: gene Location: 318744-321533 bp Ori: KSC95998.1 Feature: domain Description: LptD Location: 318939-321519 bp Feature: domain Description: LptD Location: 31 8939-321 51 9 bp Feature: gene Location: 321666-323378 bp Ori: KSC95999.1 Feature: domain Description: RVT_N Location: 321723-321966 bp Feature: domain Description: RVT_N Location: 321 723-321 966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 322011-322647 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32201 1 -322647 bp Feature: domain Description: YkfC Location: 322857-323007 bp Feature: domain Description: YkfC Location: 322857-323007 bp Feature: domain Description: HNH Note: nucleases Location: 323184-323322 bp Feature: domain Description: HNH Note: nucleases Location: 3231 84-323322 bp Feature: gene Location: 323523-323777 bp Feature: gene Location: 324650-325666 bp Ori: KSC96000.1 Feature: domain Description: COG3178 Location: 324653-325652 bp Feature: domain Description: COG31 78 Location: 324653-325652 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional)
LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: LLLQ01000001.1 Pseudomonas aeruginosa strain WH-SGI-V-07066 WH-SGI-V-07066_contig1, whole genome shotgun sequence (943655 bp)
Overview 1 RT 1: 104790-110767 bp Neighborhood of RT #1 [104790, 110916] Isochorismatase SLATT_5 RVT-UG17 ParAB_family SIR2-like Feature: gene Location: 104790-105383 bp Ori: KSD09858.1 Feature: domain Description: Isochorismatase Location: 104826-105351 bp Feature: domain Description: Isochorismatase Location: 10482 6-105351 bp Feature: gene Location: 106352-106927 bp Ori: OPD71625.1 Feature: domain Description: SLATT_5 Location: 106364-106898 bp Feature: domain Description: SLATT_5 Location: 106364-106898 bp Feature: gene Location: 106924-108285 bp Ori: KSD09859.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 107152-107755 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 107152 -107755 bp Feature: gene Location: 109000-110025 bp Ori: OPD71626.1 Feature: domain Description: ParAB_family Location: 109042-109747 bp Feature: domain Description: ParAB_family Location: 109042 -109747 bp Feature: gene Location: 110026-110916 bp Ori: KSD09860.1 Feature: domain Description: SIR2-like Location: 110074-110767 bp Feature: domain Description: SIR2 -like Location: 110074-110767 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Isochorismatase (pfam00857), SLATT_5 (pfam18160), RVT-UG17, ParAB_family (cd02042), SIR2-like (cd01406)