myRT

myRT report for GCA_001449465.1_WH-SGI-V-07165

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Seq: LLLU01000074.1 Pseudomonas aeruginosa strain WH-SGI-V-07165 WH-SGI-V-07165_contig5, whole genome shotgun sequence (413569 bp)
Overview 1 RT 1: 77065-87329 bp Neighborhood of RT #1 [77065, 87329] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH INT_Rci_Hp1_C Feature: gene Location: 77065-78918 bp Feature: domain Description: PRK05658 Location: 77077-78916 bp Feature: domain Description: PRK05658 Location: 77077-7891 6 bp Feature: gene Location: 79025-82762 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 79133-79790 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 791 33-79790 bp Feature: domain Description: PRK09776 Location: 80003-80477 bp Feature: domain Description: PRK09776 Location: 80003-80477 bp Feature: domain Description: PAS Location: 80522-81062 bp Feature: domain Description: PAS Location: 80522-81 062 bp Feature: domain Description: PRK10060 Location: 81065-82712 bp Feature: domain Description: PRK1 0060 Location: 81 065-8271 2 bp Feature: gene Location: 83843-85528 bp Feature: RT Description: RVT_N Location: 83900-84140 bp Feature: RT Description: RVT_N Location: 83900-841 40 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84188-84824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 841 88-84824 bp Feature: domain Description: GIIM Note: maturase Location: 84878-85109 bp Feature: domain Description: GIIM Note: maturase Location: 84878-851 09 bp Feature: domain Description: HNH Note: nucleases Location: 85361-85499 bp Feature: domain Description: HNH Note: nucleases Location: 85361 -85499 bp Feature: gene Location: 85829-86890 bp Feature: domain Description: INT_Rci_Hp1_C Location: 86339-86840 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 86339-86840 bp Feature: gene Location: 87105-87329 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), INT_Rci_Hp1_C (cd00796)

Seq: LLLU01000109.1 Pseudomonas aeruginosa strain WH-SGI-V-07165 WH-SGI-V-07165_contig81, whole genome shotgun sequence (1853 bp)
Overview 1 RT 1: 66-1236 bp Neighborhood of RT #1 [66, 1334] RVT-GII GIIM Feature: gene Location: 66-1334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 279-936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 79-936 bp Feature: domain Description: GIIM Note: maturase Location: 1014-1236 bp Feature: domain Description: GIIM Note: maturase Location: 1014-12 36 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)