myRT

myRT report for GCA_001449515.1_WH-SGI-V-07168

Download annotations/find similar RTs

Seq: LLLX01000029.1 Pseudomonas aeruginosa strain WH-SGI-V-07168 WH-SGI-V-07168_contig3, whole genome shotgun sequence (500411 bp)
Overview 1 RT 1: 415863-425868 bp 2 RT 2: 442126-450290 bp Neighborhood of RT #1 [415863, 425870] HTH_XRE int RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [442126, 450304] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 415863-416102 bp Ori: KSD89401.1 Feature: domain Description: HTH_XRE Location: 415875-416019 bp Feature: domain Description: HTH_XRE Location: 41 5875-41 601 9 bp Feature: gene Location: 416107-417276 bp Ori: OPD73635.1 Feature: domain Description: int Location: 416113-417127 bp Feature: domain Description: int Location: 41 61 1 3-41 71 27 bp Feature: gene Location: 417407-419092 bp Ori: KSD89402.1 Feature: domain Description: RVT_N Location: 417464-417704 bp Feature: domain Description: RVT_N Location: 41 7464-41 7704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 417752-418388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 7752-41 8388 bp Feature: domain Description: GIIM Note: maturase Location: 418442-418673 bp Feature: domain Description: GIIM Note: maturase Location: 41 8442-41 8673 bp Feature: domain Description: HNH Note: nucleases Location: 418925-419063 bp Feature: domain Description: HNH Note: nucleases Location: 41 8925-41 9063 bp Feature: gene Location: 420173-423910 bp Ori: KSD89403.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 420281-420938 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 420281 -420938 bp Feature: domain Description: PRK09776 Location: 421151-421622 bp Feature: domain Description: PRK09776 Location: 421 1 51 -421 622 bp Feature: domain Description: PAS Location: 421679-422204 bp Feature: domain Description: PAS Location: 421 679-422204 bp Feature: domain Description: PRK10060 Location: 422216-423860 bp Feature: domain Description: PRK1 0060 Location: 42221 6-423860 bp Feature: gene Location: 424017-425870 bp Ori: KSD89404.1 Feature: domain Description: PRK05658 Location: 424029-425868 bp Feature: domain Description: PRK05658 Location: 424029-425868 bp Feature: gene Location: 442126-443418 bp Ori: KSD89421.1 Feature: domain Description: PRK10770 Location: 442216-443410 bp Feature: domain Description: PRK1 0770 Location: 44221 6-44341 0 bp Feature: gene Location: 443399-446170 bp Ori: KSD89422.1 Feature: domain Description: LptD Location: 443594-446156 bp Feature: domain Description: LptD Location: 443594-4461 56 bp Feature: gene Location: 446303-448015 bp Ori: KSD89423.1 Feature: domain Description: RVT_N Location: 446360-446603 bp Feature: domain Description: RVT_N Location: 446360-446603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 446648-447284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 446648-447284 bp Feature: domain Description: YkfC Location: 447494-447644 bp Feature: domain Description: YkfC Location: 447494-447644 bp Feature: domain Description: HNH Note: nucleases Location: 447821-447959 bp Feature: domain Description: HNH Note: nucleases Location: 447821 -447959 bp Feature: gene Location: 448203-448415 bp Feature: gene Location: 449288-450304 bp Ori: KSD89424.1 Feature: domain Description: COG3178 Location: 449291-450290 bp Feature: domain Description: COG31 78 Location: 449291 -450290 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), int (PHA02601), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: LLLX01000042.1 Pseudomonas aeruginosa strain WH-SGI-V-07168 WH-SGI-V-07168_contig41, whole genome shotgun sequence (12810 bp)
Overview 1 RT 1: 2458-10630 bp Neighborhood of RT #1 [2458, 10824] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 2458-4329 bp Ori: KSD87066.1 Feature: domain Description: DUF262 Location: 2506-3274 bp Feature: domain Description: DUF2 62 Location: 2 506-32 74 bp Feature: gene Location: 4333-5073 bp Ori: KSD87071.2 Feature: domain Description: YeeA Location: 4348-4939 bp Feature: domain Description: YeeA Location: 4348-4939 bp Feature: gene Location: 6111-8609 bp Ori: KSD87067.2 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 6114-6555 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 6114-6555 bp Feature: gene Location: 9128-9685 bp Feature: gene Location: 9685-10824 bp Ori: KSD87069.1 Feature: domain Description: AAA_21 Location: 9757-9826 bp Feature: domain Description: AAA_2 1 Location: 9757-982 6 bp Feature: domain Description: AAA_21 Location: 10300-10630 bp Feature: domain Description: AAA_2 1 Location: 10300-10630 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: LLLX01000095.1 Pseudomonas aeruginosa strain WH-SGI-V-07168 WH-SGI-V-07168_contig9, whole genome shotgun sequence (260161 bp)
Overview 1 RT 1: 254392-260161 bp Neighborhood of RT #1 [254392, 260161] CHD CHD RVT-GII GIIM Feature: gene Location: 254392-255936 bp Ori: KSD81445.1 Feature: domain Description: CHD Location: 254608-255022 bp Feature: domain Description: CHD Location: 254608-255022 bp Feature: domain Description: CHD Location: 255250-255739 bp Feature: domain Description: CHD Location: 255250-25573 9 bp Feature: gene Location: 257455-257781 bp Feature: gene Location: 257931-259199 bp Ori: KSD81446.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258144-258801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258144-258801 bp Feature: domain Description: GIIM Note: maturase Location: 258879-259101 bp Feature: domain Description: GIIM Note: maturase Location: 258879-259101 bp Feature: gene Location: 259719-260161 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388)