myRT

myRT report for GCA_001449545.1_WH-SGI-V-07169

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Seq: LLLY01000179.1 Pseudomonas aeruginosa strain WH-SGI-V-07169 WH-SGI-V-07169_contig26, whole genome shotgun sequence (102341 bp)
Overview 1 RT 1: 62520-70720 bp 2 RT 2: 86985-97284 bp Neighborhood of RT #1 [62520, 70728] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [86985, 97295] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 62520-63536 bp Feature: domain Description: COG3178 Location: 62523-63522 bp Feature: domain Description: COG31 78 Location: 62523-63522 bp Feature: gene Location: 64409-64621 bp Feature: gene Location: 64809-66521 bp Feature: RT Description: RVT_N Location: 64866-65109 bp Feature: RT Description: RVT_N Location: 64866-651 09 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65154-65790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 651 54-65790 bp Feature: domain Description: YkfC Location: 66000-66150 bp Feature: domain Description: YkfC Location: 66000-661 50 bp Feature: domain Description: HNH Note: nucleases Location: 66327-66465 bp Feature: domain Description: HNH Note: nucleases Location: 66327-66465 bp Feature: gene Location: 66654-69455 bp Feature: domain Description: LptD Location: 66849-69441 bp Feature: domain Description: LptD Location: 66849-69441 bp Feature: gene Location: 69436-70728 bp Feature: domain Description: PRK10770 Location: 69526-70720 bp Feature: domain Description: PRK1 0770 Location: 69526-70720 bp Feature: gene Location: 86985-88838 bp Feature: domain Description: PRK05658 Location: 86997-88836 bp Feature: domain Description: PRK05658 Location: 86997-88836 bp Feature: gene Location: 88945-92682 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 89053-89710 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 89053-8971 0 bp Feature: domain Description: PRK09776 Location: 89923-90394 bp Feature: domain Description: PRK09776 Location: 89923-90394 bp Feature: domain Description: PAS Location: 90451-90976 bp Feature: domain Description: PAS Location: 90451 -90976 bp Feature: domain Description: PRK10060 Location: 90985-92632 bp Feature: domain Description: PRK1 0060 Location: 90985-92632 bp Feature: gene Location: 93763-95448 bp Feature: RT Description: RVT_N Location: 93820-94060 bp Feature: RT Description: RVT_N Location: 93820-94060 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94108-94744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 941 08-94744 bp Feature: domain Description: GIIM Note: maturase Location: 94798-95029 bp Feature: domain Description: GIIM Note: maturase Location: 94798-95029 bp Feature: domain Description: HNH Note: nucleases Location: 95281-95419 bp Feature: domain Description: HNH Note: nucleases Location: 95281 -9541 9 bp Feature: gene Location: 95751-95912 bp Feature: gene Location: 96174-97295 bp Feature: domain Description: COG3177 Location: 96192-97284 bp Feature: domain Description: COG31 77 Location: 961 92-97284 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )