myRT

myRT report for GCA_001449555.1_WH-SGI-V-07171

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Seq: LLMA01000023.1 Pseudomonas aeruginosa strain WH-SGI-V-07171 WH-SGI-V-07171_contig3, whole genome shotgun sequence (500478 bp)
Overview 1 RT 1: 415863-425868 bp 2 RT 2: 442126-450290 bp Neighborhood of RT #1 [415863, 425870] HTH_XRE int RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [442126, 450304] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 415863-416102 bp Ori: KSD51419.1 Feature: domain Description: HTH_XRE Location: 415875-416019 bp Feature: domain Description: HTH_XRE Location: 41 5875-41 601 9 bp Feature: gene Location: 416107-417276 bp Ori: OPD72325.1 Feature: domain Description: int Location: 416113-417127 bp Feature: domain Description: int Location: 41 61 1 3-41 71 27 bp Feature: gene Location: 417407-419092 bp Ori: KSD51420.1 Feature: domain Description: RVT_N Location: 417464-417704 bp Feature: domain Description: RVT_N Location: 41 7464-41 7704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 417752-418388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 7752-41 8388 bp Feature: domain Description: GIIM Note: maturase Location: 418442-418673 bp Feature: domain Description: GIIM Note: maturase Location: 41 8442-41 8673 bp Feature: domain Description: HNH Note: nucleases Location: 418925-419063 bp Feature: domain Description: HNH Note: nucleases Location: 41 8925-41 9063 bp Feature: gene Location: 420173-423910 bp Ori: KSD51421.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 420281-420938 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 420281 -420938 bp Feature: domain Description: PRK09776 Location: 421151-421622 bp Feature: domain Description: PRK09776 Location: 421 1 51 -421 622 bp Feature: domain Description: PAS Location: 421679-422204 bp Feature: domain Description: PAS Location: 421 679-422204 bp Feature: domain Description: PRK10060 Location: 422216-423860 bp Feature: domain Description: PRK1 0060 Location: 42221 6-423860 bp Feature: gene Location: 424017-425870 bp Ori: KSD51422.1 Feature: domain Description: PRK05658 Location: 424029-425868 bp Feature: domain Description: PRK05658 Location: 424029-425868 bp Feature: gene Location: 442126-443418 bp Ori: KSD51440.1 Feature: domain Description: PRK10770 Location: 442216-443410 bp Feature: domain Description: PRK1 0770 Location: 44221 6-44341 0 bp Feature: gene Location: 443399-446170 bp Ori: KSD51441.1 Feature: domain Description: LptD Location: 443594-446156 bp Feature: domain Description: LptD Location: 443594-4461 56 bp Feature: gene Location: 446303-448015 bp Ori: KSD51442.1 Feature: domain Description: RVT_N Location: 446360-446603 bp Feature: domain Description: RVT_N Location: 446360-446603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 446648-447284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 446648-447284 bp Feature: domain Description: YkfC Location: 447494-447644 bp Feature: domain Description: YkfC Location: 447494-447644 bp Feature: domain Description: HNH Note: nucleases Location: 447821-447959 bp Feature: domain Description: HNH Note: nucleases Location: 447821 -447959 bp Feature: gene Location: 448203-448415 bp Feature: gene Location: 449288-450304 bp Ori: KSD51443.1 Feature: domain Description: COG3178 Location: 449291-450290 bp Feature: domain Description: COG31 78 Location: 449291 -450290 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), int (PHA02601), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: LLMA01000002.1 Pseudomonas aeruginosa strain WH-SGI-V-07171 WH-SGI-V-07171_contig10, whole genome shotgun sequence (260193 bp)
Overview 1 RT 1: 254424-260193 bp Neighborhood of RT #1 [254424, 260193] CHD CHD RVT-GII GIIM Feature: gene Location: 254424-255968 bp Ori: KSD57061.1 Feature: domain Description: CHD Location: 254640-255054 bp Feature: domain Description: CHD Location: 2 54640-2 55054 bp Feature: domain Description: CHD Location: 255282-255771 bp Feature: domain Description: CHD Location: 2 552 82 -2 55771 bp Feature: gene Location: 257487-257813 bp Feature: gene Location: 257963-259231 bp Ori: KSD57062.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258176-258833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 58176-2 58833 bp Feature: domain Description: GIIM Note: maturase Location: 258911-259133 bp Feature: domain Description: GIIM Note: maturase Location: 2 58911-2 59133 bp Feature: gene Location: 259751-260193 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388)

Seq: LLMA01000035.1 Pseudomonas aeruginosa strain WH-SGI-V-07171 WH-SGI-V-07171_contig40, whole genome shotgun sequence (12810 bp)
Overview 1 RT 1: 1987-9298 bp Neighborhood of RT #1 [1987, 10353] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1987-3126 bp Ori: KSD49569.1 Feature: domain Description: AAA_21 Location: 2059-2128 bp Feature: domain Description: AAA_21 Location: 2059-2128 bp Feature: domain Description: AAA_21 Location: 2602-2932 bp Feature: domain Description: AAA_21 Location: 2602-293 2 bp Feature: gene Location: 3126-3683 bp Feature: gene Location: 4202-6700 bp Ori: KSD49571.2 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4205-4646 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4205-4646 bp Feature: gene Location: 7738-8478 bp Ori: KSD49573.2 Feature: domain Description: YeeA Location: 7753-8344 bp Feature: domain Description: YeeA Location: 7753 -83 44 bp Feature: gene Location: 8482-10353 bp Ori: KSD49572.1 Feature: domain Description: DUF262 Location: 8530-9298 bp Feature: domain Description: DUF262 Location: 853 0-9298 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)