myRT

myRT report for GCA_001449605.1_WH-SGI-V-07174

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Seq: LLMD01000076.1 Pseudomonas aeruginosa strain WH-SGI-V-07174 WH-SGI-V-07174_contig43, whole genome shotgun sequence (12810 bp)
Overview 1 RT 1: 2458-10630 bp Neighborhood of RT #1 [2458, 10824] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 2458-4329 bp Ori: KSD96031.1 Feature: domain Description: DUF262 Location: 2506-3274 bp Feature: domain Description: DUF262 Location: 2506-3274 bp Feature: gene Location: 4333-5073 bp Ori: KSD96036.2 Feature: domain Description: YeeA Location: 4348-4939 bp Feature: domain Description: YeeA Location: 4348-4939 bp Feature: gene Location: 6111-8609 bp Ori: KSD96032.2 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 6114-6555 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 61 1 4-6555 bp Feature: gene Location: 9128-9685 bp Feature: gene Location: 9685-10824 bp Ori: KSD96034.1 Feature: domain Description: AAA_21 Location: 9757-9826 bp Feature: domain Description: AAA_21 Location: 9757-9826 bp Feature: domain Description: AAA_21 Location: 10300-10630 bp Feature: domain Description: AAA_21 Location: 1 0300-1 0630 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: LLMD01000061.1 Pseudomonas aeruginosa strain WH-SGI-V-07174 WH-SGI-V-07174_contig3, whole genome shotgun sequence (500478 bp)
Overview 1 RT 1: 50175-58345 bp 2 RT 2: 74609-84533 bp Neighborhood of RT #1 [50175, 58353] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74609, 84616] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH int HTH_XRE Feature: gene Location: 50175-51191 bp Ori: KSD98034.1 Feature: domain Description: COG3178 Location: 50178-51177 bp Feature: domain Description: COG3178 Location: 50178-51177 bp Feature: gene Location: 52064-52276 bp Feature: gene Location: 52464-54176 bp Ori: KSD98035.1 Feature: domain Description: RVT_N Location: 52521-52764 bp Feature: domain Description: RVT_N Location: 52 52 1-52 764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52809-53445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 809-53445 bp Feature: domain Description: YkfC Location: 53655-53805 bp Feature: domain Description: YkfC Location: 53655-53805 bp Feature: domain Description: HNH Note: nucleases Location: 53982-54120 bp Feature: domain Description: HNH Note: nucleases Location: 53982 -5412 0 bp Feature: gene Location: 54309-57080 bp Ori: KSD98036.1 Feature: domain Description: LptD Location: 54504-57066 bp Feature: domain Description: LptD Location: 54504-57066 bp Feature: gene Location: 57061-58353 bp Ori: KSD98037.1 Feature: domain Description: PRK10770 Location: 57151-58345 bp Feature: domain Description: PRK10770 Location: 57151-58345 bp Feature: gene Location: 74609-76462 bp Ori: KSD98055.1 Feature: domain Description: PRK05658 Location: 74621-76460 bp Feature: domain Description: PRK05658 Location: 7462 1-76460 bp Feature: gene Location: 76569-80306 bp Ori: KSD98056.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 76677-77334 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 76677-77334 bp Feature: domain Description: PRK09776 Location: 77547-78018 bp Feature: domain Description: PRK09776 Location: 77547-78018 bp Feature: domain Description: PAS Location: 78075-78600 bp Feature: domain Description: PAS Location: 78075-78600 bp Feature: domain Description: PRK10060 Location: 78612-80256 bp Feature: domain Description: PRK10060 Location: 78612 -802 56 bp Feature: gene Location: 81387-83072 bp Ori: KSD98057.1 Feature: domain Description: RVT_N Location: 81444-81684 bp Feature: domain Description: RVT_N Location: 81444-81684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81732-82368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81732 -82 368 bp Feature: domain Description: GIIM Note: maturase Location: 82422-82653 bp Feature: domain Description: GIIM Note: maturase Location: 82 42 2 -82 653 bp Feature: domain Description: HNH Note: nucleases Location: 82905-83043 bp Feature: domain Description: HNH Note: nucleases Location: 82 905-83043 bp Feature: gene Location: 83203-84372 bp Ori: OPD74958.1 Feature: domain Description: int Location: 83209-84223 bp Feature: domain Description: int Location: 832 09-842 2 3 bp Feature: gene Location: 84377-84616 bp Ori: KSD98058.1 Feature: domain Description: HTH_XRE Location: 84389-84533 bp Feature: domain Description: HTH_XRE Location: 84389-84533 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), int (PHA02601), HTH_XRE (smart00530)

Seq: LLMD01000127.1 Pseudomonas aeruginosa strain WH-SGI-V-07174 WH-SGI-V-07174_contig9, whole genome shotgun sequence (260208 bp)
Overview 1 RT 1: 254439-260208 bp Neighborhood of RT #1 [254439, 260208] CHD CHD RVT-GII GIIM Feature: gene Location: 254439-255983 bp Ori: KSD87841.1 Feature: domain Description: CHD Location: 254655-255069 bp Feature: domain Description: CHD Location: 254655-255069 bp Feature: domain Description: CHD Location: 255297-255786 bp Feature: domain Description: CHD Location: 255297-255786 bp Feature: gene Location: 257502-257828 bp Feature: gene Location: 257978-259246 bp Ori: KSD87842.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258191-258848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258191-258848 bp Feature: domain Description: GIIM Note: maturase Location: 258926-259148 bp Feature: domain Description: GIIM Note: maturase Location: 258926-259148 bp Feature: gene Location: 259766-260208 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388)