myRT

myRT report for GCA_001449675.1_WH-SGI-V-07180

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Seq: LLMJ01000091.1 Pseudomonas aeruginosa strain WH-SGI-V-07180 WH-SGI-V-07180_contig9, whole genome shotgun sequence (260216 bp)
Overview 1 RT 1: 254447-260216 bp Neighborhood of RT #1 [254447, 260216] CHD CHD RVT-GII GIIM Feature: gene Location: 254447-255991 bp Ori: KSE58092.1 Feature: domain Description: CHD Location: 254663-255077 bp Feature: domain Description: CHD Location: 254663-255077 bp Feature: domain Description: CHD Location: 255305-255794 bp Feature: domain Description: CHD Location: 255305-255794 bp Feature: gene Location: 257510-257836 bp Feature: gene Location: 257986-259254 bp Ori: KSE58093.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258199-258856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2581 99-258856 bp Feature: domain Description: GIIM Note: maturase Location: 258934-259156 bp Feature: domain Description: GIIM Note: maturase Location: 258934-2591 56 bp Feature: gene Location: 259774-260216 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388)

Seq: LLMJ01000019.1 Pseudomonas aeruginosa strain WH-SGI-V-07180 WH-SGI-V-07180_contig24, whole genome shotgun sequence (91637 bp)
Overview 1 RT 1: 7022-17027 bp 2 RT 2: 33285-41449 bp Neighborhood of RT #1 [7022, 17029] HTH_XRE int RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [33285, 41463] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 7022-7261 bp Ori: KSE69790.1 Feature: domain Description: HTH_XRE Location: 7034-7178 bp Feature: domain Description: HTH_XRE Location: 7034-7178 bp Feature: gene Location: 7266-8435 bp Ori: OPD76354.1 Feature: domain Description: int Location: 7272-8286 bp Feature: domain Description: int Location: 72 72 -82 86 bp Feature: gene Location: 8566-10251 bp Ori: KSE69791.1 Feature: domain Description: RVT_N Location: 8623-8863 bp Feature: domain Description: RVT_N Location: 862 3-8863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8911-9547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8911-9547 bp Feature: domain Description: GIIM Note: maturase Location: 9601-9832 bp Feature: domain Description: GIIM Note: maturase Location: 9601-9832 bp Feature: domain Description: HNH Note: nucleases Location: 10084-10222 bp Feature: domain Description: HNH Note: nucleases Location: 10084-102 2 2 bp Feature: gene Location: 11332-15069 bp Ori: KSE69792.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 11440-12097 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 11440-12 097 bp Feature: domain Description: PRK09776 Location: 12310-12781 bp Feature: domain Description: PRK09776 Location: 12 310-12 781 bp Feature: domain Description: PAS Location: 12838-13363 bp Feature: domain Description: PAS Location: 12 838-13363 bp Feature: domain Description: PRK10060 Location: 13375-15019 bp Feature: domain Description: PRK10060 Location: 13375-15019 bp Feature: gene Location: 15176-17029 bp Ori: KSE69793.1 Feature: domain Description: PRK05658 Location: 15188-17027 bp Feature: domain Description: PRK05658 Location: 15188-1702 7 bp Feature: gene Location: 33285-34577 bp Ori: KSE69811.1 Feature: domain Description: PRK10770 Location: 33375-34569 bp Feature: domain Description: PRK10770 Location: 33375-34569 bp Feature: gene Location: 34558-37329 bp Ori: KSE69812.1 Feature: domain Description: LptD Location: 34753-37315 bp Feature: domain Description: LptD Location: 34753-37315 bp Feature: gene Location: 37462-39174 bp Ori: KSE69813.1 Feature: domain Description: RVT_N Location: 37519-37762 bp Feature: domain Description: RVT_N Location: 37519-37762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37807-38443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37807-38443 bp Feature: domain Description: YkfC Location: 38653-38803 bp Feature: domain Description: YkfC Location: 38653-38803 bp Feature: domain Description: HNH Note: nucleases Location: 38980-39118 bp Feature: domain Description: HNH Note: nucleases Location: 38980-39118 bp Feature: gene Location: 39362-39574 bp Feature: gene Location: 40447-41463 bp Ori: KSE69814.1 Feature: domain Description: COG3178 Location: 40450-41449 bp Feature: domain Description: COG3178 Location: 40450-41449 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), int (PHA02601), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: LLMJ01000031.1 Pseudomonas aeruginosa strain WH-SGI-V-07180 WH-SGI-V-07180_contig35, whole genome shotgun sequence (36345 bp)
Overview 1 RT 1: 25994-34165 bp Neighborhood of RT #1 [25994, 34359] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25994-27865 bp Ori: KSE67403.1 Feature: domain Description: DUF262 Location: 26042-26810 bp Feature: domain Description: DUF262 Location: 26042-26810 bp Feature: gene Location: 27869-28840 bp Ori: KSE67409.1 Feature: domain Description: YeeA Location: 27926-28706 bp Feature: domain Description: YeeA Location: 27926-28706 bp Feature: gene Location: 29646-32144 bp Ori: KSE67404.2 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29649-30090 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29649-3 0090 bp Feature: gene Location: 32663-33220 bp Feature: gene Location: 33220-34359 bp Ori: KSE67406.1 Feature: domain Description: AAA_21 Location: 33292-33361 bp Feature: domain Description: AAA_21 Location: 3 3 292-3 3 3 61 bp Feature: domain Description: AAA_21 Location: 33835-34165 bp Feature: domain Description: AAA_21 Location: 3 3 83 5-3 4165 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: LLMJ01000007.1 Pseudomonas aeruginosa strain WH-SGI-V-07180 WH-SGI-V-07180_contig13, whole genome shotgun sequence (201699 bp)
Overview 1 RT 1: 81477-86194 bp Neighborhood of RT #1 [81477, 86229] SdhE RVT_N RVT-GII YkfC HNH YgfZ Feature: gene Location: 81477-81929 bp Feature: gene Location: 81913-82167 bp Ori: KSE73360.1 Feature: domain Description: SdhE Location: 81919-82159 bp Feature: domain Description: SdhE Location: 81919-82159 bp Feature: gene Location: 82243-83964 bp Ori: KSE73361.1 Feature: domain Description: RVT_N Location: 82300-82537 bp Feature: domain Description: RVT_N Location: 82300-82537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82588-83224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82588-83224 bp Feature: domain Description: YkfC Location: 83422-83578 bp Feature: domain Description: YkfC Location: 834 22-83578 bp Feature: domain Description: HNH Note: nucleases Location: 83761-83899 bp Feature: domain Description: HNH Note: nucleases Location: 83761-83899 bp Feature: gene Location: 84051-84328 bp Feature: gene Location: 85285-86229 bp Ori: KSE73362.1 Feature: domain Description: YgfZ Location: 85294-86194 bp Feature: domain Description: YgfZ Location: 85294 -86194 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354)