myRT

myRT report for GCA_001449705.1_WH-SGI-V-07221

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Seq: LLMK01000079.1 Pseudomonas aeruginosa strain WH-SGI-V-07221 WH-SGI-V-07221_contig4, whole genome shotgun sequence (450934 bp)
Overview 1 RT 1: 50175-58345 bp 2 RT 2: 74609-84905 bp Neighborhood of RT #1 [50175, 58353] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74609, 84916] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 50175-51191 bp Ori: KSE21600.1 Feature: domain Description: COG3178 Location: 50178-51177 bp Feature: domain Description: COG31 78 Location: 501 78-51 1 77 bp Feature: gene Location: 52064-52276 bp Feature: gene Location: 52464-54176 bp Ori: KSE21601.1 Feature: domain Description: RVT_N Location: 52521-52764 bp Feature: domain Description: RVT_N Location: 52521 -52764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52809-53445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52809-53445 bp Feature: domain Description: YkfC Location: 53655-53805 bp Feature: domain Description: YkfC Location: 53655-53805 bp Feature: domain Description: HNH Note: nucleases Location: 53982-54120 bp Feature: domain Description: HNH Note: nucleases Location: 53982-541 20 bp Feature: gene Location: 54309-57080 bp Ori: KSE21602.1 Feature: domain Description: LptD Location: 54504-57066 bp Feature: domain Description: LptD Location: 54504-57066 bp Feature: gene Location: 57061-58353 bp Ori: KSE21603.1 Feature: domain Description: PRK10770 Location: 57151-58345 bp Feature: domain Description: PRK1 0770 Location: 571 51 -58345 bp Feature: gene Location: 74609-76462 bp Ori: KSE21621.1 Feature: domain Description: PRK05658 Location: 74621-76460 bp Feature: domain Description: PRK05658 Location: 74621 -76460 bp Feature: gene Location: 76569-80306 bp Ori: KSE21622.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 76677-77334 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76677-77334 bp Feature: domain Description: PRK09776 Location: 77547-78018 bp Feature: domain Description: PRK09776 Location: 77547-7801 8 bp Feature: domain Description: PAS Location: 78075-78600 bp Feature: domain Description: PAS Location: 78075-78600 bp Feature: domain Description: PRK10060 Location: 78612-80256 bp Feature: domain Description: PRK1 0060 Location: 7861 2-80256 bp Feature: gene Location: 81387-83072 bp Ori: KSE21623.1 Feature: domain Description: RVT_N Location: 81444-81684 bp Feature: domain Description: RVT_N Location: 81 444-81 684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81732-82368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 732-82368 bp Feature: domain Description: GIIM Note: maturase Location: 82422-82653 bp Feature: domain Description: GIIM Note: maturase Location: 82422-82653 bp Feature: domain Description: HNH Note: nucleases Location: 82905-83043 bp Feature: domain Description: HNH Note: nucleases Location: 82905-83043 bp Feature: gene Location: 83400-83536 bp Feature: gene Location: 83795-84916 bp Ori: KSE21624.1 Feature: domain Description: COG3177 Location: 83813-84905 bp Feature: domain Description: COG31 77 Location: 8381 3-84905 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )

Seq: LLMK01000076.1 Pseudomonas aeruginosa strain WH-SGI-V-07221 WH-SGI-V-07221_contig37, whole genome shotgun sequence (36346 bp)
Overview 1 RT 1: 25994-34166 bp Neighborhood of RT #1 [25994, 34360] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25994-27865 bp Ori: KSE22586.1 Feature: domain Description: DUF262 Location: 26042-26810 bp Feature: domain Description: DUF2 62 Location: 2 6042 -2 6810 bp Feature: gene Location: 27869-28609 bp Ori: KSE22592.2 Feature: domain Description: YeeA Location: 27884-28475 bp Feature: domain Description: YeeA Location: 2 7884-2 8475 bp Feature: gene Location: 29647-32145 bp Ori: KSE22587.2 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29650-30091 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2 9650-30091 bp Feature: gene Location: 32664-33221 bp Feature: gene Location: 33221-34360 bp Ori: KSE22589.1 Feature: domain Description: AAA_21 Location: 33293-33362 bp Feature: domain Description: AAA_2 1 Location: 332 93-33362 bp Feature: domain Description: AAA_21 Location: 33836-34166 bp Feature: domain Description: AAA_2 1 Location: 33836-34166 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: LLMK01000134.1 Pseudomonas aeruginosa strain WH-SGI-V-07221 WH-SGI-V-07221_contig9, whole genome shotgun sequence (260194 bp)
Overview 1 RT 1: 254425-260194 bp Neighborhood of RT #1 [254425, 260194] CHD CHD RVT-GII GIIM Feature: gene Location: 254425-255969 bp Ori: KSE15929.1 Feature: domain Description: CHD Location: 254641-255055 bp Feature: domain Description: CHD Location: 254641-255055 bp Feature: domain Description: CHD Location: 255283-255772 bp Feature: domain Description: CHD Location: 255283 -255772 bp Feature: gene Location: 257488-257814 bp Feature: gene Location: 257964-259232 bp Ori: KSE15930.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258177-258834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258177-25883 4 bp Feature: domain Description: GIIM Note: maturase Location: 258912-259134 bp Feature: domain Description: GIIM Note: maturase Location: 258912-25913 4 bp Feature: gene Location: 259752-260194 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388)

Seq: LLMK01000035.1 Pseudomonas aeruginosa strain WH-SGI-V-07221 WH-SGI-V-07221_contig13, whole genome shotgun sequence (190618 bp)
Overview 1 RT 1: 92673-97425 bp Neighborhood of RT #1 [92673, 97425] YgfZ RVT_N RVT-GII YkfC HNH SdhE Feature: gene Location: 92673-93617 bp Ori: KSE27162.1 Feature: domain Description: YgfZ Location: 92682-93582 bp Feature: domain Description: YgfZ Location: 92682-93582 bp Feature: gene Location: 94574-94851 bp Feature: gene Location: 94938-96659 bp Ori: KSE27163.1 Feature: domain Description: RVT_N Location: 94995-95232 bp Feature: domain Description: RVT_N Location: 94 995-95232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95283-95919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95283-95919 bp Feature: domain Description: YkfC Location: 96117-96273 bp Feature: domain Description: YkfC Location: 96117-96273 bp Feature: domain Description: HNH Note: nucleases Location: 96456-96594 bp Feature: domain Description: HNH Note: nucleases Location: 964 56-96594 bp Feature: gene Location: 96735-96989 bp Ori: KSE27164.1 Feature: domain Description: SdhE Location: 96741-96981 bp Feature: domain Description: SdhE Location: 9674 1-96981 bp Feature: gene Location: 96973-97425 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YgfZ (COG0354), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)