myRT

myRT report for GCA_001449725.1_WH-SGI-V-07181

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Seq: LLML01000067.1 Pseudomonas aeruginosa strain WH-SGI-V-07181 WH-SGI-V-07181_contig27, whole genome shotgun sequence (94195 bp)
Overview 1 RT 1: 9444-19450 bp 2 RT 2: 35709-43903 bp Neighborhood of RT #1 [9444, 19452] HTH_XRE int RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [35709, 43917] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 9444-9683 bp Feature: domain Description: HTH_XRE Location: 9456-9600 bp Feature: domain Description: HTH_XRE Location: 9456-9600 bp Feature: gene Location: 9688-10707 bp Feature: domain Description: int Location: 9694-10705 bp Feature: domain Description: int Location: 9694-1 0705 bp Feature: gene Location: 10989-12674 bp Feature: RT Description: RVT_N Location: 11046-11286 bp Feature: RT Description: RVT_N Location: 1 1 046-1 1 286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11334-11970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 334-1 1 970 bp Feature: domain Description: GIIM Note: maturase Location: 12024-12255 bp Feature: domain Description: GIIM Note: maturase Location: 1 2024-1 2255 bp Feature: domain Description: HNH Note: nucleases Location: 12507-12645 bp Feature: domain Description: HNH Note: nucleases Location: 1 2507-1 2645 bp Feature: gene Location: 13755-17492 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 13863-14520 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1 3863-1 4520 bp Feature: domain Description: PRK09776 Location: 14733-15204 bp Feature: domain Description: PRK09776 Location: 1 4733-1 5204 bp Feature: domain Description: PAS Location: 15261-15786 bp Feature: domain Description: PAS Location: 1 5261 -1 5786 bp Feature: domain Description: PRK10060 Location: 15795-17442 bp Feature: domain Description: PRK1 0060 Location: 1 5795-1 7442 bp Feature: gene Location: 17599-19452 bp Feature: domain Description: PRK05658 Location: 17611-19450 bp Feature: domain Description: PRK05658 Location: 1 761 1 -1 9450 bp Feature: gene Location: 35709-37001 bp Feature: domain Description: PRK10770 Location: 35799-36993 bp Feature: domain Description: PRK1 0770 Location: 35799-36993 bp Feature: gene Location: 36982-39783 bp Feature: domain Description: LptD Location: 37177-39769 bp Feature: domain Description: LptD Location: 371 77-39769 bp Feature: gene Location: 39916-41628 bp Feature: RT Description: RVT_N Location: 39973-40216 bp Feature: RT Description: RVT_N Location: 39973-4021 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40261-40897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40261 -40897 bp Feature: domain Description: YkfC Location: 41107-41257 bp Feature: domain Description: YkfC Location: 41 1 07-41 257 bp Feature: domain Description: HNH Note: nucleases Location: 41434-41572 bp Feature: domain Description: HNH Note: nucleases Location: 41 434-41 572 bp Feature: gene Location: 41816-42028 bp Feature: gene Location: 42901-43917 bp Feature: domain Description: COG3178 Location: 42904-43903 bp Feature: domain Description: COG31 78 Location: 42904-43903 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated), int (PHA02601)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )