myRT

myRT report for GCA_001449935.1_WH-SGI-V-07232

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Seq: LLND01000027.1 Pseudomonas aeruginosa strain WH-SGI-V-07232 WH-SGI-V-07232_contig3, whole genome shotgun sequence (434747 bp)
Overview 1 RT 1: 295346-305654 bp 2 RT 2: 321913-330106 bp Neighborhood of RT #1 [295346, 305656] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [321913, 330120] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 295346-296467 bp Feature: domain Description: COG3177 Location: 295364-296456 bp Feature: domain Description: COG31 77 Location: 295364-296456 bp Feature: gene Location: 296729-296890 bp Feature: gene Location: 297193-298878 bp Feature: RT Description: RVT_N Location: 297250-297490 bp Feature: RT Description: RVT_N Location: 297250-297490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 297538-298174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 297538-2981 74 bp Feature: domain Description: GIIM Note: maturase Location: 298228-298459 bp Feature: domain Description: GIIM Note: maturase Location: 298228-298459 bp Feature: domain Description: HNH Note: nucleases Location: 298711-298849 bp Feature: domain Description: HNH Note: nucleases Location: 29871 1 -298849 bp Feature: gene Location: 299959-303696 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 300067-300724 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 300067-300724 bp Feature: domain Description: PRK09776 Location: 300937-301408 bp Feature: domain Description: PRK09776 Location: 300937-301 408 bp Feature: domain Description: PAS Location: 301465-301990 bp Feature: domain Description: PAS Location: 301 465-301 990 bp Feature: domain Description: PRK10060 Location: 301999-303646 bp Feature: domain Description: PRK1 0060 Location: 301 999-303646 bp Feature: gene Location: 303803-305656 bp Feature: domain Description: PRK05658 Location: 303815-305654 bp Feature: domain Description: PRK05658 Location: 30381 5-305654 bp Feature: gene Location: 321913-323205 bp Feature: domain Description: PRK10770 Location: 322003-323197 bp Feature: domain Description: PRK1 0770 Location: 322003-3231 97 bp Feature: gene Location: 323186-325987 bp Feature: domain Description: LptD Location: 323381-325973 bp Feature: domain Description: LptD Location: 323381 -325973 bp Feature: gene Location: 326120-327832 bp Feature: RT Description: RVT_N Location: 326177-326420 bp Feature: RT Description: RVT_N Location: 3261 77-326420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 326465-327098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 326465-327098 bp Feature: domain Description: YkfC Location: 327311-327461 bp Feature: domain Description: YkfC Location: 32731 1 -327461 bp Feature: domain Description: HNH Note: nucleases Location: 327638-327776 bp Feature: domain Description: HNH Note: nucleases Location: 327638-327776 bp Feature: gene Location: 328019-328231 bp Feature: gene Location: 329104-330120 bp Feature: domain Description: COG3178 Location: 329107-330106 bp Feature: domain Description: COG31 78 Location: 3291 07-3301 06 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )