myRT

myRT report for GCA_001449985.1_WH-SGI-V-07235

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Seq: LLNG01000001.1 Pseudomonas aeruginosa strain WH-SGI-V-07235 WH-SGI-V-07235_contig1, whole genome shotgun sequence (865935 bp)
Overview 1 RT 1: 860166-865935 bp Neighborhood of RT #1 [860166, 865935] CHD CHD RVT-GII GIIM Feature: gene Location: 860166-861710 bp Feature: domain Description: CHD Location: 860382-860796 bp Feature: domain Description: CHD Location: 860382-860796 bp Feature: domain Description: CHD Location: 861024-861513 bp Feature: domain Description: CHD Location: 861 024-861 51 3 bp Feature: gene Location: 863229-863555 bp Feature: gene Location: 863705-864973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 863918-864575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86391 8-864575 bp Feature: domain Description: GIIM Note: maturase Location: 864653-864875 bp Feature: domain Description: GIIM Note: maturase Location: 864653-864875 bp Feature: gene Location: 865493-865935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388)

Seq: LLNG01000078.1 Pseudomonas aeruginosa strain WH-SGI-V-07235 WH-SGI-V-07235_contig8, whole genome shotgun sequence (416642 bp)
Overview 1 RT 1: 52249-60431 bp 2 RT 2: 76696-86993 bp Neighborhood of RT #1 [52249, 60439] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [76696, 87004] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 52249-53265 bp Feature: domain Description: COG3178 Location: 52252-53251 bp Feature: domain Description: COG3178 Location: 52 2 52 -532 51 bp Feature: gene Location: 54138-54350 bp Feature: gene Location: 54538-56250 bp Feature: RT Description: RVT_N Location: 54595-54838 bp Feature: RT Description: RVT_N Location: 54595-54838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54883-55519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54883-55519 bp Feature: domain Description: YkfC Location: 55726-55879 bp Feature: domain Description: YkfC Location: 5572 6-55879 bp Feature: domain Description: HNH Note: nucleases Location: 56056-56194 bp Feature: domain Description: HNH Note: nucleases Location: 56056-56194 bp Feature: gene Location: 56383-59166 bp Feature: domain Description: LptD Location: 56578-59152 bp Feature: domain Description: LptD Location: 56578-59152 bp Feature: gene Location: 59147-60439 bp Feature: domain Description: PRK10770 Location: 59237-60431 bp Feature: domain Description: PRK10770 Location: 592 37-60431 bp Feature: gene Location: 76696-78549 bp Feature: domain Description: PRK05658 Location: 76708-78547 bp Feature: domain Description: PRK05658 Location: 76708-78547 bp Feature: gene Location: 78656-82393 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 78764-79421 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 78764-7942 1 bp Feature: domain Description: PRK09776 Location: 79634-80105 bp Feature: domain Description: PRK09776 Location: 79634-80105 bp Feature: domain Description: PAS Location: 80162-80687 bp Feature: domain Description: PAS Location: 80162 -80687 bp Feature: domain Description: PRK10060 Location: 80696-82343 bp Feature: domain Description: PRK10060 Location: 80696-82 343 bp Feature: gene Location: 83474-85159 bp Feature: RT Description: RVT_N Location: 83531-83771 bp Feature: RT Description: RVT_N Location: 83531-83771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83819-84455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83819-84455 bp Feature: domain Description: GIIM Note: maturase Location: 84509-84740 bp Feature: domain Description: GIIM Note: maturase Location: 84509-84740 bp Feature: domain Description: HNH Note: nucleases Location: 84992-85130 bp Feature: domain Description: HNH Note: nucleases Location: 84992 -85130 bp Feature: gene Location: 85487-85624 bp Feature: gene Location: 85883-87004 bp Feature: domain Description: COG3177 Location: 85901-86993 bp Feature: domain Description: COG3177 Location: 85901-86993 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )