myRT

myRT report for GCA_001450005.1_WH-SGI-V-07237

Download annotations/find similar RTs

Seq: LLNI01000119.1 Pseudomonas aeruginosa strain WH-SGI-V-07237 WH-SGI-V-07237_contig49, whole genome shotgun sequence (37993 bp)
Overview 1 RT 1: 33913-37993 bp Neighborhood of RT #1 [33913, 37993] COG4127 AlpA RVT-UG5 nitrilase Feature: gene Location: 33913-34905 bp Ori: KSG07355.1 Feature: domain Description: COG4127 Location: 33919-34894 bp Feature: domain Description: COG41 27 Location: 3391 9-34894 bp Feature: gene Location: 34910-35122 bp Ori: OPD83777.1 Feature: domain Description: AlpA Location: 34913-35084 bp Feature: domain Description: AlpA Location: 3491 3-35084 bp Feature: gene Location: 35275-37764 bp Ori: KSG07356.2 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 35281-35716 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 35281 -3571 6 bp Feature: domain Description: nitrilase Location: 37078-37660 bp Feature: domain Description: nitrilase Location: 37078-37660 bp Feature: gene Location: 37849-37993 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), AlpA (COG3311), RVT-UG5, nitrilase (cl11424)

Seq: LLNI01000068.1 Pseudomonas aeruginosa strain WH-SGI-V-07237 WH-SGI-V-07237_contig16, whole genome shotgun sequence (177902 bp)
Overview 1 RT 1: 78813-89118 bp 2 RT 2: 105377-113544 bp Neighborhood of RT #1 [78813, 89120] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [105377, 113558] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 78813-79934 bp Ori: KSG16996.1 Feature: domain Description: COG3177 Location: 78831-79923 bp Feature: domain Description: COG3177 Location: 78831-7992 3 bp Feature: gene Location: 80193-80329 bp Feature: gene Location: 80657-82342 bp Ori: KSG16997.1 Feature: domain Description: RVT_N Location: 80714-80954 bp Feature: domain Description: RVT_N Location: 80714-80954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81002-81638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81002 -81638 bp Feature: domain Description: GIIM Note: maturase Location: 81692-81923 bp Feature: domain Description: GIIM Note: maturase Location: 81692 -8192 3 bp Feature: domain Description: HNH Note: nucleases Location: 82175-82313 bp Feature: domain Description: HNH Note: nucleases Location: 82 175-82 313 bp Feature: gene Location: 83423-87160 bp Ori: KSG16998.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 83531-84188 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 83531-84188 bp Feature: domain Description: PRK09776 Location: 84401-84872 bp Feature: domain Description: PRK09776 Location: 84401-84872 bp Feature: domain Description: PAS Location: 84929-85454 bp Feature: domain Description: PAS Location: 8492 9-85454 bp Feature: domain Description: PRK10060 Location: 85466-87110 bp Feature: domain Description: PRK10060 Location: 85466-87110 bp Feature: gene Location: 87267-89120 bp Ori: KSG16999.1 Feature: domain Description: PRK05658 Location: 87279-89118 bp Feature: domain Description: PRK05658 Location: 872 79-89118 bp Feature: gene Location: 105377-106669 bp Ori: KSG17017.1 Feature: domain Description: PRK10770 Location: 105467-106661 bp Feature: domain Description: PRK10770 Location: 105467-106661 bp Feature: gene Location: 106650-109424 bp Ori: KSG17018.1 Feature: domain Description: LptD Location: 106845-109410 bp Feature: domain Description: LptD Location: 106845-109410 bp Feature: gene Location: 109557-111269 bp Ori: KSG17019.1 Feature: domain Description: RVT_N Location: 109614-109857 bp Feature: domain Description: RVT_N Location: 109614-109857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109902-110538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109902 -110538 bp Feature: domain Description: YkfC Location: 110745-110898 bp Feature: domain Description: YkfC Location: 110745-110898 bp Feature: domain Description: HNH Note: nucleases Location: 111075-111213 bp Feature: domain Description: HNH Note: nucleases Location: 111075-1112 13 bp Feature: gene Location: 111457-111669 bp Feature: gene Location: 112542-113558 bp Ori: KSG17020.1 Feature: domain Description: COG3178 Location: 112545-113544 bp Feature: domain Description: COG3178 Location: 112 545-113544 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: LLNI01000160.1 Pseudomonas aeruginosa strain WH-SGI-V-07237 WH-SGI-V-07237_contig86, whole genome shotgun sequence (2418 bp)
Overview 1 RT 1: 83-1754 bp Neighborhood of RT #1 [83, 1801] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 83-1801 bp Ori: KSF96597.1 Feature: domain Description: RVT_N Location: 140-377 bp Feature: domain Description: RVT_N Location: 140-3 77 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 428-1079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 428-1079 bp Feature: domain Description: GIIM Note: maturase Location: 1133-1364 bp Feature: domain Description: GIIM Note: maturase Location: 113 3 -13 64 bp Feature: domain Description: HNHc Note: nucleases Location: 1598-1754 bp Feature: domain Description: HNHc Note: nucleases Location: 1598-1754 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)