myRT

myRT report for GCA_001450085.1_WH-SGI-V-07244

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Seq: LLNP01000052.1 Pseudomonas aeruginosa strain WH-SGI-V-07244 WH-SGI-V-07244_contig56, whole genome shotgun sequence (2421 bp)
Overview 1 RT 1: 86-1757 bp Neighborhood of RT #1 [86, 1804] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 86-1804 bp Ori: KSG45163.1 Feature: domain Description: RVT_N Location: 143-380 bp Feature: domain Description: RVT_N Location: 1 43-380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431-1082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431 -1 082 bp Feature: domain Description: GIIM Note: maturase Location: 1136-1367 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 36-1 367 bp Feature: domain Description: HNHc Note: nucleases Location: 1601-1757 bp Feature: domain Description: HNHc Note: nucleases Location: 1 601 -1 757 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: LLNP01000034.1 Pseudomonas aeruginosa strain WH-SGI-V-07244 WH-SGI-V-07244_contig4, whole genome shotgun sequence (494788 bp)
Overview 1 RT 1: 490643-494705 bp Neighborhood of RT #1 [490643, 494788] COG4127 AlpA RVT-UG5 nitrilase rve_3 Feature: gene Location: 490643-491635 bp Ori: KSG47481.1 Feature: domain Description: COG4127 Location: 490649-491624 bp Feature: domain Description: COG412 7 Location: 490649-49162 4 bp Feature: gene Location: 491640-491852 bp Ori: OPD84294.1 Feature: domain Description: AlpA Location: 491643-491814 bp Feature: domain Description: AlpA Location: 491643-491814 bp Feature: gene Location: 492005-494494 bp Ori: KSG47482.2 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 492011-492446 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 492 011-492 446 bp Feature: domain Description: nitrilase Location: 493808-494390 bp Feature: domain Description: nitrilase Location: 493808-494390 bp Feature: gene Location: 494579-494788 bp Ori: OPD84298.1 Feature: domain Description: rve_3 Location: 494582-494705 bp Feature: domain Description: rve_3 Location: 494582 -494705 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), AlpA (COG3311), RVT-UG5, nitrilase (cl11424), rve_3 (pfam13683)