myRT

myRT report for GCA_001450165.1_WH-SGI-V-07370

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Seq: LLNU01000085.1 Pseudomonas aeruginosa strain WH-SGI-V-07370 WH-SGI-V-07370_contig18, whole genome shotgun sequence (107848 bp)
Overview 1 RT 1: 11700-21706 bp 2 RT 2: 37961-46139 bp Neighborhood of RT #1 [11700, 21708] HTH_XRE int RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [37961, 46153] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 11700-11939 bp Feature: domain Description: HTH_XRE Location: 11712-11856 bp Feature: domain Description: HTH_XRE Location: 1 1 71 2-1 1 856 bp Feature: gene Location: 11944-12963 bp Feature: domain Description: int Location: 11950-12961 bp Feature: domain Description: int Location: 1 1 950-1 2961 bp Feature: gene Location: 13245-14930 bp Feature: RT Description: RVT_N Location: 13302-13542 bp Feature: RT Description: RVT_N Location: 1 3302-1 3542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13590-14226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3590-1 4226 bp Feature: domain Description: GIIM Note: maturase Location: 14280-14511 bp Feature: domain Description: GIIM Note: maturase Location: 1 4280-1 451 1 bp Feature: domain Description: HNH Note: nucleases Location: 14763-14901 bp Feature: domain Description: HNH Note: nucleases Location: 1 4763-1 4901 bp Feature: gene Location: 16011-19748 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 16119-16776 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1 61 1 9-1 6776 bp Feature: domain Description: PRK09776 Location: 16989-17463 bp Feature: domain Description: PRK09776 Location: 1 6989-1 7463 bp Feature: domain Description: PAS Location: 17514-18048 bp Feature: domain Description: PAS Location: 1 751 4-1 8048 bp Feature: domain Description: PRK10060 Location: 18051-19698 bp Feature: domain Description: PRK1 0060 Location: 1 8051 -1 9698 bp Feature: gene Location: 19855-21708 bp Feature: domain Description: PRK05658 Location: 19867-21706 bp Feature: domain Description: PRK05658 Location: 1 9867-21 706 bp Feature: gene Location: 37961-39253 bp Feature: domain Description: PRK10770 Location: 38051-39245 bp Feature: domain Description: PRK1 0770 Location: 38051 -39245 bp Feature: gene Location: 39234-42020 bp Feature: domain Description: LptD Location: 39579-42006 bp Feature: domain Description: LptD Location: 39579-42006 bp Feature: gene Location: 42153-43865 bp Feature: RT Description: RVT_N Location: 42210-42453 bp Feature: RT Description: RVT_N Location: 4221 0-42453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42498-43131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42498-431 31 bp Feature: domain Description: YkfC Location: 43344-43494 bp Feature: domain Description: YkfC Location: 43344-43494 bp Feature: domain Description: HNH Note: nucleases Location: 43671-43809 bp Feature: domain Description: HNH Note: nucleases Location: 43671 -43809 bp Feature: gene Location: 44052-44264 bp Feature: gene Location: 45137-46153 bp Feature: domain Description: COG3178 Location: 45140-46139 bp Feature: domain Description: COG31 78 Location: 451 40-461 39 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), int (PHA02601), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )