myRT

myRT report for GCA_001450195.1_WH-SGI-V-07374

Download annotations/find similar RTs

Seq: LLNY01000091.1 Pseudomonas aeruginosa strain WH-SGI-V-07374 WH-SGI-V-07374_contig5, whole genome shotgun sequence (381198 bp)
Overview 1 RT 1: 49551-58391 bp Neighborhood of RT #1 [49551, 58399] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Feature: gene Location: 49551-50225 bp Ori: KSG63193.1 Feature: domain Description: NTP_transferase_like_1 Location: 49557-50196 bp Feature: domain Description: NTP_transferase_like_1 Location: 49557-501 96 bp Feature: gene Location: 50222-51238 bp Ori: KSG63194.1 Feature: domain Description: COG3178 Location: 50225-51224 bp Feature: domain Description: COG31 78 Location: 50225-51 224 bp Feature: gene Location: 52510-54222 bp Ori: KSG63195.1 Feature: domain Description: RVT_N Location: 52567-52810 bp Feature: domain Description: RVT_N Location: 52567-5281 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52855-53488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52855-53488 bp Feature: domain Description: YkfC Location: 53701-53851 bp Feature: domain Description: YkfC Location: 53701 -53851 bp Feature: domain Description: HNH Note: nucleases Location: 54028-54166 bp Feature: domain Description: HNH Note: nucleases Location: 54028-541 66 bp Feature: gene Location: 54355-57126 bp Ori: KSG63196.1 Feature: domain Description: LptD Location: 54550-57112 bp Feature: domain Description: LptD Location: 54550-571 1 2 bp Feature: gene Location: 57107-58399 bp Ori: KSG63197.1 Feature: domain Description: PRK10770 Location: 57197-58391 bp Feature: domain Description: PRK1 0770 Location: 571 97-58391 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional)

Seq: LLNY01000080.1 Pseudomonas aeruginosa strain WH-SGI-V-07374 WH-SGI-V-07374_contig4, whole genome shotgun sequence (440640 bp)
Overview 1 RT 1: 273208-281635 bp Neighborhood of RT #1 [273208, 281670] Prok-E2_A E1_enzyme_family Prok-JAB RVT-UG5 YgiQ DUF4823 Feature: gene Location: 273208-275433 bp Ori: KSG64426.2 Feature: domain Description: Prok-E2_A Location: 273340-273733 bp Feature: domain Description: Prok-E2 _A Location: 2 73340-2 73733 bp Feature: domain Description: E1_enzyme_family Location: 274318-274648 bp Feature: domain Description: E1_enzyme_family Location: 2 74318-2 74648 bp Feature: domain Description: Prok-JAB Location: 275050-275407 bp Feature: domain Description: Prok-JAB Location: 2 75050-2 75407 bp Feature: gene Location: 275895-276293 bp Feature: gene Location: 276672-279848 bp Ori: KSG64428.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 277209-277707 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2 772 09-2 77707 bp Feature: gene Location: 280200-280973 bp Ori: KSG64429.1 Feature: domain Description: YgiQ Location: 280215-280875 bp Feature: domain Description: YgiQ Location: 2 802 15-2 80875 bp Feature: gene Location: 281038-281670 bp Ori: KSG64430.1 Feature: domain Description: DUF4823 Location: 281194-281635 bp Feature: domain Description: DUF482 3 Location: 2 81194-2 81635 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Prok-E2_A (pfam14457), E1_enzyme_family (cl22428), Prok-JAB (pfam14464), RVT-UG5, YgiQ (COG1032), DUF4823 (pfam16105)