myRT

myRT report for GCA_001450265.1_WH-SGI-V-07378

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Seq: LLOC01000152.1 Pseudomonas aeruginosa strain WH-SGI-V-07378 WH-SGI-V-07378_contig56, whole genome shotgun sequence (17950 bp)
Overview 1 RT 1: 394-4698 bp Neighborhood of RT #1 [394, 4730] IS5 RVT-GII GIIM IS5 IS5 Feature: gene Location: 394-912 bp Feature: domain Description: IS5 Location: 580-913 bp Feature: domain Description: IS5 Location: 580-91 3 bp Feature: gene Location: 945-1043 bp Feature: gene Location: 1443-2687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1647-2304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 647-2304 bp Feature: domain Description: GIIM Note: maturase Location: 2382-2604 bp Feature: domain Description: GIIM Note: maturase Location: 2382-2604 bp Feature: gene Location: 2761-3231 bp Feature: domain Description: IS5 Location: 2767-3199 bp Feature: domain Description: IS5 Location: 2767-31 99 bp Feature: gene Location: 3750-4730 bp Feature: domain Description: IS5 Location: 3936-4698 bp Feature: domain Description: IS5 Location: 3936-4698 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), IS5 (COG3039)

Seq: LLOC01000118.1 Pseudomonas aeruginosa strain WH-SGI-V-07378 WH-SGI-V-07378_contig25, whole genome shotgun sequence (109153 bp)
Overview 1 RT 1: 50707-55590 bp Neighborhood of RT #1 [50707, 55598] PRK13360 COG3450 RVT_N RVT-GII YkfC HNHc rpmG Feature: gene Location: 50707-52041 bp Feature: domain Description: PRK13360 Location: 50710-52033 bp Feature: domain Description: PRK13360 Location: 50710-52 033 bp Feature: gene Location: 52107-52469 bp Feature: domain Description: COG3450 Location: 52110-52455 bp Feature: domain Description: COG3450 Location: 52 110-52 455 bp Feature: gene Location: 52684-54381 bp Feature: RT Description: RVT_N Location: 52741-52984 bp Feature: RT Description: RVT_N Location: 52 741-52 984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53029-53665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5302 9-53665 bp Feature: domain Description: YkfC Location: 53887-54022 bp Feature: domain Description: YkfC Location: 53887-5402 2 bp Feature: domain Description: HNHc Note: nucleases Location: 54169-54334 bp Feature: domain Description: HNHc Note: nucleases Location: 54169-54334 bp Feature: gene Location: 54577-54954 bp Feature: gene Location: 55443-55598 bp Feature: domain Description: rpmG Location: 55446-55590 bp Feature: domain Description: rpmG Location: 55446-55590 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13360 (omega amino acid--pyruvate transaminase; Provisional), COG3450 (Predicted enzyme of the cupin superfamily ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), rpmG (PRK00595)

Seq: LLOC01000117.1 Pseudomonas aeruginosa strain WH-SGI-V-07378 WH-SGI-V-07378_contig24, whole genome shotgun sequence (122038 bp)
Overview 1 RT 1: 50306-58506 bp 2 RT 2: 74771-85068 bp Neighborhood of RT #1 [50306, 58514] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74771, 85079] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 50306-51322 bp Feature: domain Description: COG3178 Location: 50309-51308 bp Feature: domain Description: COG3 178 Location: 503 09-513 08 bp Feature: gene Location: 52195-52407 bp Feature: gene Location: 52595-54307 bp Feature: RT Description: RVT_N Location: 52652-52895 bp Feature: RT Description: RVT_N Location: 52652-52895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52940-53576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52940-53 576 bp Feature: domain Description: YkfC Location: 53783-53936 bp Feature: domain Description: YkfC Location: 53 783 -53 93 6 bp Feature: domain Description: HNH Note: nucleases Location: 54113-54251 bp Feature: domain Description: HNH Note: nucleases Location: 54113 -54251 bp Feature: gene Location: 54440-57241 bp Feature: domain Description: LptD Location: 54635-57227 bp Feature: domain Description: LptD Location: 5463 5-57227 bp Feature: gene Location: 57222-58514 bp Feature: domain Description: PRK10770 Location: 57312-58506 bp Feature: domain Description: PRK10770 Location: 573 12-58506 bp Feature: gene Location: 74771-76624 bp Feature: domain Description: PRK05658 Location: 74783-76622 bp Feature: domain Description: PRK05658 Location: 74783 -76622 bp Feature: gene Location: 76731-80468 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76839-77496 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 7683 9-77496 bp Feature: domain Description: PRK09776 Location: 77709-78180 bp Feature: domain Description: PRK09776 Location: 77709-78180 bp Feature: domain Description: PAS Location: 78240-78762 bp Feature: domain Description: PAS Location: 78240-78762 bp Feature: domain Description: PRK10060 Location: 78771-80418 bp Feature: domain Description: PRK10060 Location: 78771-80418 bp Feature: gene Location: 81549-83234 bp Feature: RT Description: RVT_N Location: 81606-81846 bp Feature: RT Description: RVT_N Location: 81606-81846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81894-82530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81894-8253 0 bp Feature: domain Description: GIIM Note: maturase Location: 82584-82815 bp Feature: domain Description: GIIM Note: maturase Location: 82584-82815 bp Feature: domain Description: HNH Note: nucleases Location: 83067-83205 bp Feature: domain Description: HNH Note: nucleases Location: 83 067-83 205 bp Feature: gene Location: 83563-83699 bp Feature: gene Location: 83958-85079 bp Feature: domain Description: COG3177 Location: 83976-85068 bp Feature: domain Description: COG3 177 Location: 83 976-85068 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )