myRT

myRT report for GCA_001450355.1_WH-SGI-V-07055

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Seq: LLKZ01000013.1 Pseudomonas aeruginosa strain WH-SGI-V-07055 WH-SGI-V-07055_contig2, whole genome shotgun sequence (681913 bp)
Overview 1 RT 1: 545085-555381 bp 2 RT 2: 571636-579809 bp Neighborhood of RT #1 [545085, 555383] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 sensory_box PAS_9 PRK10060 PRK05658 Neighborhood of RT #2 [571636, 579823] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 545085-546206 bp Feature: domain Description: COG3177 Location: 545103-546195 bp Feature: domain Description: COG31 77 Location: 5451 03-5461 95 bp Feature: gene Location: 546468-546617 bp Feature: gene Location: 546920-548605 bp Feature: RT Description: RVT_N Location: 546977-547217 bp Feature: RT Description: RVT_N Location: 546977-54721 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 547265-547901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 547265-547901 bp Feature: domain Description: GIIM Note: maturase Location: 547955-548186 bp Feature: domain Description: GIIM Note: maturase Location: 547955-5481 86 bp Feature: domain Description: HNH Note: nucleases Location: 548438-548576 bp Feature: domain Description: HNH Note: nucleases Location: 548438-548576 bp Feature: gene Location: 549686-553423 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 549794-550451 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 549794-550451 bp Feature: domain Description: PRK09776 Location: 550664-550985 bp Feature: domain Description: PRK09776 Location: 550664-550985 bp Feature: domain Description: sensory_box Location: 550994-551354 bp Feature: domain Description: sensory_box Location: 550994-551 354 bp Feature: domain Description: PAS_9 Location: 551402-551708 bp Feature: domain Description: PAS_9 Location: 551 402-551 708 bp Feature: domain Description: PRK10060 Location: 551726-553373 bp Feature: domain Description: PRK1 0060 Location: 551 726-553373 bp Feature: gene Location: 553530-555383 bp Feature: domain Description: PRK05658 Location: 553542-555381 bp Feature: domain Description: PRK05658 Location: 553542-555381 bp Feature: gene Location: 571636-572928 bp Feature: domain Description: PRK10770 Location: 571726-572920 bp Feature: domain Description: PRK1 0770 Location: 571 726-572920 bp Feature: gene Location: 572909-575689 bp Feature: domain Description: LptD Location: 573254-575675 bp Feature: domain Description: LptD Location: 573254-575675 bp Feature: gene Location: 575822-577534 bp Feature: RT Description: RVT_N Location: 575879-576122 bp Feature: RT Description: RVT_N Location: 575879-5761 22 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 576167-576803 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5761 67-576803 bp Feature: domain Description: YkfC Location: 577010-577163 bp Feature: domain Description: YkfC Location: 57701 0-5771 63 bp Feature: domain Description: HNH Note: nucleases Location: 577340-577478 bp Feature: domain Description: HNH Note: nucleases Location: 577340-577478 bp Feature: gene Location: 577722-577934 bp Feature: gene Location: 578807-579823 bp Feature: domain Description: COG3178 Location: 578810-579809 bp Feature: domain Description: COG31 78 Location: 57881 0-579809 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), sensory_box (TIGR00229), PAS_9 (pfam13426), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )