myRT

myRT report for GCA_001450435.1_WH-SGI-V-07061

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Seq: LLLL01000023.1 Pseudomonas aeruginosa strain WH-SGI-V-07061 WH-SGI-V-07061_contig2, whole genome shotgun sequence (623027 bp)
Overview 1 RT 1: 535786-542676 bp Neighborhood of RT #1 [535786, 542690] PBP2_HisK RVT-UG15 DEAH_box_HrpB IV_pilus_PilQ Feature: gene Location: 535786-536520 bp Ori: KSC86460.1 Feature: domain Description: PBP2_HisK Location: 535888-536500 bp Feature: domain Description: PBP2_HisK Location: 535888-536500 bp Feature: gene Location: 536544-536951 bp Feature: gene Location: 537827-539128 bp Ori: KSC86462.1 Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 537932-538346 bp Feature: RT Description: RVT-UG1 5 Note: UG1 5 RT Location: 537932-538346 bp Feature: gene Location: 539239-541761 bp Ori: KSC86463.1 Feature: domain Description: DEAH_box_HrpB Location: 539251-541756 bp Feature: domain Description: DEAH_box_HrpB Location: 539251 -541 756 bp Feature: gene Location: 542076-542690 bp Ori: KSC86464.1 Feature: domain Description: IV_pilus_PilQ Location: 542466-542676 bp Feature: domain Description: IV_pilus_PilQ Location: 542466-542676 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP2_HisK (cd13704), RVT-UG15, DEAH_box_HrpB (TIGR01970), IV_pilus_PilQ (TIGR02515)

Seq: LLLL01000045.1 Pseudomonas aeruginosa strain WH-SGI-V-07061 WH-SGI-V-07061_contig4, whole genome shotgun sequence (378052 bp)
Overview 1 RT 1: 50612-58666 bp 2 RT 2: 74930-85227 bp Neighborhood of RT #1 [50612, 58674] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74930, 85238] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 50612-51628 bp Ori: KSC82462.1 Feature: domain Description: COG3178 Location: 50615-51614 bp Feature: domain Description: COG3178 Location: 50615-51614 bp Feature: gene Location: 52355-52567 bp Feature: gene Location: 52755-54467 bp Ori: KSC82463.1 Feature: domain Description: RVT_N Location: 52812-53055 bp Feature: domain Description: RVT_N Location: 52 812 -53055 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53100-53736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53100-53736 bp Feature: domain Description: YkfC Location: 53943-54096 bp Feature: domain Description: YkfC Location: 53943-54096 bp Feature: domain Description: HNH Note: nucleases Location: 54273-54411 bp Feature: domain Description: HNH Note: nucleases Location: 542 73-54411 bp Feature: gene Location: 54600-57401 bp Ori: KSC82464.1 Feature: domain Description: LptD Location: 54795-57387 bp Feature: domain Description: LptD Location: 54795-57387 bp Feature: gene Location: 57382-58674 bp Ori: KSC82465.1 Feature: domain Description: PRK10770 Location: 57472-58666 bp Feature: domain Description: PRK10770 Location: 57472 -58666 bp Feature: gene Location: 74930-76783 bp Ori: KSC82483.1 Feature: domain Description: PRK05658 Location: 74942-76781 bp Feature: domain Description: PRK05658 Location: 74942 -76781 bp Feature: gene Location: 76890-80627 bp Ori: KSC82484.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 76998-77655 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 76998-77655 bp Feature: domain Description: PRK09776 Location: 77868-78339 bp Feature: domain Description: PRK09776 Location: 77868-78339 bp Feature: domain Description: PAS Location: 78396-78921 bp Feature: domain Description: PAS Location: 78396-7892 1 bp Feature: domain Description: PRK10060 Location: 78930-80577 bp Feature: domain Description: PRK10060 Location: 78930-80577 bp Feature: gene Location: 81708-83393 bp Ori: KSC82485.1 Feature: domain Description: RVT_N Location: 81765-82005 bp Feature: domain Description: RVT_N Location: 81765-82 005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82053-82689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82 053-82 689 bp Feature: domain Description: GIIM Note: maturase Location: 82743-82974 bp Feature: domain Description: GIIM Note: maturase Location: 82 743-82 974 bp Feature: domain Description: HNH Note: nucleases Location: 83226-83364 bp Feature: domain Description: HNH Note: nucleases Location: 832 2 6-83364 bp Feature: gene Location: 83721-83858 bp Feature: gene Location: 84117-85238 bp Ori: KSC82487.1 Feature: domain Description: COG3177 Location: 84135-85227 bp Feature: domain Description: COG3177 Location: 84135-852 2 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )